Hi Douglas,

Thank you so much for your help!

Regards, Heidi Foo

On Fri, May 6, 2016 at 12:21 AM, Douglas N Greve greve@nmr.mgh.harvard.edu wrote:

To see whether the final label is correct, load the label in freeview or tksurfer and see if it looks right.

You can use mris_anatomical_stats to get the volumes, etc, from the label (-l option). You may want to recombine the lobes into an annotation with mris_label2annot

doug

On 05/05/2016 12:17 PM, Heidi Foo wrote:

...

Dear FreeSurfer experts,

I apologise for posting this again. I am unable to get the volumes for the cortical regions despite following the commands on https://surfer.nmr.mgh.harvard.edu/fswiki/CorticalParcellation

I am using FS5.3 to do the parcellation.

I created a folder called "labels" inside each of my subject folder. Attached the output.

I tried to use mri_mergelabels -i label1 -i label2 -o outputlabel. Attached the command as well as the output. *I am not sure if the output is correct and also, how should I get the total volume for each lobe out? * Thank you so much for your help. Regards, Heidi Foo

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