Re: [Freesurfer] Calculating group-wise Dice Similarity Coefficient and corresponding surface map
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Thank you for the response Bruce.
I apologize for the confusion regarding surface map but what I was trying is that I wanted to create a surface file that contains dice coefficients for labels across the entire cortex. With your response, I think I can get the average dice coefficient for each label and hopefully create a surface map that visualizes dice coefficients on brain surface map.
Would there be a way to create my own surface map with brain morphometry values that I created?
Best, Julia Shin
I guess doing it in matlab would be easiest
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Hye Min Shin Sent: Friday, June 25, 2021 1:24 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Calculating group-wise Dice Similarity Coefficient and corresponding surface map
External Email - Use Caution Thank you for the response Bruce.
I apologize for the confusion regarding surface map but what I was trying is that I wanted to create a surface file that contains dice coefficients for labels across the entire cortex. With your response, I think I can get the average dice coefficient for each label and hopefully create a surface map that visualizes dice coefficients on brain surface map.
Would there be a way to create my own surface map with brain morphometry values that I created?
Best, Julia Shin
try $FREESURFER_HOME//matlab/annotval2surfoverlay.m
On 6/25/2021 2:55 PM, Fischl, Bruce wrote:
I guess doing it in matlab would be easiest
*From:* freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu *On Behalf Of *Hye Min Shin *Sent:* Friday, June 25, 2021 1:24 PM *To:* freesurfer@nmr.mgh.harvard.edu *Subject:* Re: [Freesurfer] Calculating group-wise Dice Similarity Coefficient and corresponding surface map
* External Email - Use Caution *
Thank you for the response Bruce.
I apologize for the confusion regarding surface map but what I was trying is that I wanted to create a surface file that contains dice coefficients for labels across the entire cortex. With your response, I think I can get the average dice coefficient for each label and hopefully create a surface map that visualizes dice coefficients on brain surface map.
Would there be a way to create my own surface map with brain morphometry values that I created?
Best,
Julia Shin
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Douglas N. Greve -
Fischl, Bruce -
Hye Min Shin