External Email - Use Caution
Hi,
We are wanting to run the hippocampal subfields which is part of the developmental version of FreeSurfer ("freesurfer-darwin-macOS-dev.pkg").
The FreeSurfer v7.0.0 Dev and the Matlab2014b (Run Time Version) has also been installed.
But are getting errors. E.g., "... Invalid MEX-file '/tmp/MCR_488630323/.mcrCache8.4/Segmen0/autofs/space/panamint_005/users/ig lesias/software/freesurfer.GEMS2.MAC/bin/kvlGEMSMatlab.mexmaci64' ..."
It looks like a similar problem existed in 2018 (though I cannot find a fix). https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg56815.html
Any help would be greatly appreciated. Thanks in advance!
Regards, Chester
Hi Chester
This is now fixed in the newest dev release. The osx gcc libraries required by the matlab binaries weren’t being distributed correctly. Sorry for the inconvenience
best Andrew
From: freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Chester Kang ckkang@unimelb.edu.au Reply-To: FS Help freesurfer@nmr.mgh.harvard.edu Date: Sunday, March 29, 2020 at 6:54 PM To: FS Help freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] segmentThalamicNuclei.sh - Undefined symbol error, Invalid MEX file
External Email - Use Caution Hi,
We are wanting to run the hippocampal subfields which is part of the developmental version of FreeSurfer ("freesurfer-darwin-macOS-dev.pkg").
The FreeSurfer v7.0.0 Dev and the Matlab2014b (Run Time Version) has also been installed.
But are getting errors. E.g., "... Invalid MEX-file '/tmp/MCR_488630323/.mcrCache8.4/Segmen0/autofs/space/panamint_005/users/ig lesias/software/freesurfer.GEMS2.MAC/bin/kvlGEMSMatlab.mexmaci64' ..."
It looks like a similar problem existed in 2018 (though I cannot find a fix). https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg56815.html
Any help would be greatly appreciated. Thanks in advance!
Regards, Chester
Same as in 2018, I’ll resort to Andrew here :-) Andrew, any ideas?
Juan Eugenio Iglesias Senior research fellow CMIC (UCL), MGH (HMS) and CSAIL (MIT) http://www.jeiglesias.com
From: freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Chester Kang ckkang@unimelb.edu.au Reply-To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Date: Sunday, March 29, 2020 at 18:54 To: "freesurfer@nmr.mgh.harvard.edu" freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] segmentThalamicNuclei.sh - Undefined symbol error, Invalid MEX file
External Email - Use Caution Hi,
We are wanting to run the hippocampal subfields which is part of the developmental version of FreeSurfer ("freesurfer-darwin-macOS-dev.pkg").
The FreeSurfer v7.0.0 Dev and the Matlab2014b (Run Time Version) has also been installed.
But are getting errors. E.g., "... Invalid MEX-file '/tmp/MCR_488630323/.mcrCache8.4/Segmen0/autofs/space/panamint_005/users/ig lesias/software/freesurfer.GEMS2.MAC/bin/kvlGEMSMatlab.mexmaci64' ..."
It looks like a similar problem existed in 2018 (though I cannot find a fix). https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg56815.html
Any help would be greatly appreciated. Thanks in advance!
Regards, Chester
freesurfer@nmr.mgh.harvard.edu
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Chester Kang -
Hoopes, Andrew -
Iglesias Gonzalez, Juan E.