Dear FreeSurfer user,
we are sorry to let you know that the longitudinal stream in FreeSurfer Release 5.0 is broken due to some last minute improvements to mri_robust_register. It shares some of it's code with mri_robust_template, where the 'improvements' break the processing, which leads to blurry average images in some cases.
We are working on a fix and will let you know immediately when it is ready. Until then you can keep processing your longitudinal data with 4.5 which does not have the bug.
Best regards, Martin Reuter
freesurfer@nmr.mgh.harvard.edu