Those are talairach coords. Not sure about your FDR question. Can you elaborate? Also, you need to be careful about how you interpret FDR, it is not a p value!

deepa preeti wrote:

Hi all,

Could you please tell us if the end result of GroupAnalysis on cortical thickness with mri_surfcluster command line - the coordinates in sig.cluster.sum is MNI coordinates or talairach coordinates? since I need to know Broadmann area to locate the significant region using the coordinates.

2. If I use FDR to get results at p = 0.05, where are the results

stored so that I could report that a significant region for example, temporal pole 100 sq.mm http://sq.mm/ has reduced to temporal pole ..70. sq.mm http://sq.mm/?

Thanks Deepa.

---

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer