you should be able to just use it as is.

Trina Kok wrote:

Hi all,

We have a number of MPRAGEs acquired from the same patient from different days and would like to align them. We really want a transform matrix out of the alignment just like how spmregister aligns functional data to anatomical and gives a matrix in register.dat. I was wondering if there is a way to use spmregister for this purpose. Or is there something else for aligning two anatomical images?

Thanks!!

Cheers, Trina _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer