External Email - Use Caution
Dear experts,
I have processed my data with -T2pial option. I would like now to also compute thickness from woT2.pial surfaces (i.e. surfaces created by T1 only). Is here a comannd which does the trick, without running recon-all -pial (which rewrites current .pial and .thickness files generatedy by -T2pial? I am using freeSurfer version 6.0.
Thank you in advance,
Antonin Skoch
Hi Antonín
You can specify what surfaces to use in mris_thickness:
mris_thickness -pial <path to pial surface> -white <path to white surface> …
cheers Bruce
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Antonín Škoch Sent: Wednesday, December 9, 2020 6:16 AM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Computing thickness from woT2.pial surfaces
External Email - Use Caution Dear experts,
I have processed my data with -T2pial option. I would like now to also compute thickness from woT2.pial surfaces (i.e. surfaces created by T1 only). Is here a comannd which does the trick, without running recon-all -pial (which rewrites current .pial and .thickness files generatedy by -T2pial? I am using freeSurfer version 6.0.
Thank you in advance,
Antonin Skoch
If you're using v7XX, then you can use mris_place_surfaces. Look in the log file for the command line.
On 12/9/2020 6:15 AM, Antonín Škoch wrote:
External Email - Use Caution
Dear experts,
I have processed my data with -T2pial option. I would like now to also compute thickness from woT2.pial surfaces (i.e. surfaces created by T1 only). Is here a comannd which does the trick, without running recon-all -pial (which rewrites current .pial and .thickness files generatedy by -T2pial? I am using freeSurfer version 6.0.
Thank you in advance,
Antonin Skoch
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