Hello I'm getting the following error when running trac-all -c dmrirc -prep
INFO: Distances between consecutive points in test subject's space are 7 9 7 8 WARN: Could not find satisfactory control point fit - try 809 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1096/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1096/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_cpts_5.nii.gz Segmentation fault Darwin cerebrum.uwm.edu 10.8.0 Darwin Kernel Version 10.8.0: Tue Jun 7 16:33:36 PDT 2011; root:xnu-1504.15.3~1/RELEASE_I386 i386
trac-preproc exited with ERRORS at Wed Jan 8 12:07:54 CST 2014
i'm running traclua 5.3
attached are the trac-all.log and trac-ll.error files
Hello I'm getting the following error when running trac-all -c dmrirc -prep
INFO: Distances between consecutive points in test subject's space are 7 9 7 8 WARN: Could not find satisfactory control point fit - try 809 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1096/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1096/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_cpts_5.nii.gz Segmentation fault Darwin cerebrum.uwm.edu 10.8.0 Darwin Kernel Version 10.8.0: Tue Jun 7 16:33:36 PDT 2011; root:xnu-1504.15.3~1/RELEASE_I386 i386
trac-preproc exited with ERRORS at Wed Jan 8 12:07:54 CST 2014
i'm running traclua 5.3
attached are the trac-all.log and trac-ll.error files
the dmri_train command is giving a segmentation fault. how can I fix this? Jon
----- Original Message ----- From: "Jon Wieser" wieser@uwm.edu To: "freesurfer" freesurfer@nmr.mgh.harvard.edu Sent: Wednesday, January 8, 2014 2:23:34 PM Subject: [Freesurfer] Fwd: trac-all -prep error
Hello I'm getting the following error when running trac-all -c dmrirc -prep
INFO: Distances between consecutive points in test subject's space are 7 9 7 8 WARN: Could not find satisfactory control point fit - try 809 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1096/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1096/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_cpts_5.nii.gz Segmentation fault Darwin cerebrum.uwm.edu 10.8.0 Darwin Kernel Version 10.8.0: Tue Jun 7 16:33:36 PDT 2011; root:xnu-1504.15.3~1/RELEASE_I386 i386
trac-preproc exited with ERRORS at Wed Jan 8 12:07:54 CST 2014
i'm running traclua 5.3
attached are the trac-all.log and trac-ll.error files
Hi Jon - Again I'd look at this subject's aparc+aseg, as well as the DWIs themselves to see if there's anything going on that might affect the left ILF.
a.y
On Wed, 8 Jan 2014, Jon Wieser wrote:
Hello I'm getting the following error when running trac-all -c dmrirc -prep
INFO: Distances between consecutive points in test subject's space are 7 9 7 8 WARN: Could not find satisfactory control point fit - try 809 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1096/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1096/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_cpts_5.nii.gz Segmentation fault Darwin cerebrum.uwm.edu 10.8.0 Darwin Kernel Version 10.8.0: Tue Jun 7 16:33:36 PDT 2011; root:xnu-1504.15.3~1/RELEASE_I386 i386
trac-preproc exited with ERRORS at Wed Jan 8 12:07:54 CST 2014
i'm running traclua 5.3
attached are the trac-all.log and trac-ll.error files
Hi Anastasia, I didn't see anything blatently wrong with the apar+aseg or the DWI's. Can you be more specific as to what I should be looking for Thanks! Jon
----- Original Message ----- From: "Anastasia Yendiki" ayendiki@nmr.mgh.harvard.edu To: "Jon Wieser" wieser@uwm.edu Cc: "freesurfer" freesurfer@nmr.mgh.harvard.edu Sent: Friday, January 10, 2014 6:16:56 PM Subject: Re: [Freesurfer] Fwd: trac-all -prep error
Hi Jon - Again I'd look at this subject's aparc+aseg, as well as the DWIs themselves to see if there's anything going on that might affect the left ILF.
a.y
On Wed, 8 Jan 2014, Jon Wieser wrote:
Hello I'm getting the following error when running trac-all -c dmrirc -prep
INFO: Distances between consecutive points in test subject's space are 7 9 7 8 WARN: Could not find satisfactory control point fit - try 809 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1096/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1096/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_cpts_5.nii.gz Segmentation fault Darwin cerebrum.uwm.edu 10.8.0 Darwin Kernel Version 10.8.0: Tue Jun 7 16:33:36 PDT 2011; root:xnu-1504.15.3~1/RELEASE_I386 i386
trac-preproc exited with ERRORS at Wed Jan 8 12:07:54 CST 2014
i'm running traclua 5.3
attached are the trac-all.log and trac-ll.error files
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
----- Forwarded Message ----- From: "Jon Wieser" wieser@uwm.edu To: "Anastasia Yendiki" ayendiki@nmr.mgh.harvard.edu Cc: "freesurfer" freesurfer@nmr.mgh.harvard.edu Sent: Wednesday, January 22, 2014 10:10:19 AM Subject: Re: [Freesurfer] Fwd: trac-all -prep error
Hi Anastasia, I didn't see anything blatently wrong with the apar+aseg or the DWI's. Can you be more specific as to what I should be looking for Thanks! Jon
----- Original Message ----- From: "Anastasia Yendiki" ayendiki@nmr.mgh.harvard.edu To: "Jon Wieser" wieser@uwm.edu Cc: "freesurfer" freesurfer@nmr.mgh.harvard.edu Sent: Friday, January 10, 2014 6:16:56 PM Subject: Re: [Freesurfer] Fwd: trac-all -prep error
Hi Jon - Again I'd look at this subject's aparc+aseg, as well as the DWIs themselves to see if there's anything going on that might affect the left ILF.
a.y
On Wed, 8 Jan 2014, Jon Wieser wrote:
Hello I'm getting the following error when running trac-all -c dmrirc -prep
INFO: Distances between consecutive points in test subject's space are 7 9 7 8 WARN: Could not find satisfactory control point fit - try 809 Writing output files to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1096/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_* Writing spline volume to /BrainLabDocs/Studies/Nicotine_MJ_Ecstasy_Study/Data/MRI/N1096/data/freesurfer/dlabel/mni/lh.ilf_AS_avg23_mni_bbr_cpts_5.nii.gz Segmentation fault Darwin cerebrum.uwm.edu 10.8.0 Darwin Kernel Version 10.8.0: Tue Jun 7 16:33:36 PDT 2011; root:xnu-1504.15.3~1/RELEASE_I386 i386
trac-preproc exited with ERRORS at Wed Jan 8 12:07:54 CST 2014
i'm running traclua 5.3
attached are the trac-all.log and trac-ll.error files
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
freesurfer@nmr.mgh.harvard.edu
-
Anastasia Yendiki -
Jon Wieser