External Email - Use Caution
Dear Freesurfer experts,
I have run the following command: recon-all -s sub-1001 -localGI -no-isrunning
However, I got the error message as below.
Warning: Input argument must be a character vector.
In ver (line 41) In freesurfer_read_surf (line 70) In find_corresponding_center_FSformat (line 26)
Error using fprintf Function is not defined for 'struct' inputs.
Error in freesurfer_read_surf (line 70) fprintf('FREESURFER_READ_SURF [v %s]\n',ver(11:15));
Error in find_corresponding_center_FSformat (line 26) [mesh_pial.vertices, mesh_pial.faces] = freesurfer_read_surf(pial);
ERROR: find_corresponding_center_FSformat did not complete successfully! Linux dn003 3.10.0-1160.88.1.el7.x86_64 #1 SMP Tue Mar 7 15:41:52 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux
recon-all -s sub-1001 exited with ERRORS at Wed Nov 22 14:59:33 EST 2023
How can I resolve the problem? Thank you for your consideration.
Best,
Daiki Sasabayashi
External Email - Use Caution
Dear Freesurfer experts,
I’m sorry, I would like to add some missing information about the following question.
OS: CentOS Linux 7 FS ver: fs7.1.0 Matlab ver: R2017a or R2022a
I would be grateful for your answer when you have time.
Best,
Daiki Sasabayashi
転送されたメッセージ:
差出人: 笹林大樹 ds179@med.u-toyama.ac.jp 件名: [Freesurfer] Errors in LGI command 日付: 2023年11月22日 15:19:36 GMT-5 宛先: Freesurfer support list freesurfer@nmr.mgh.harvard.edu 返信先: Freesurfer support list freesurfer@nmr.mgh.harvard.edu
External Email - Use CautionDear Freesurfer experts,
I have run the following command: recon-all -s sub-1001 -localGI -no-isrunning
However, I got the error message as below.
Warning: Input argument must be a character vector.
In ver (line 41) In freesurfer_read_surf (line 70) In find_corresponding_center_FSformat (line 26)
Error using fprintf Function is not defined for 'struct' inputs.
Error in freesurfer_read_surf (line 70) fprintf('FREESURFER_READ_SURF [v %s]\n',ver(11:15));
Error in find_corresponding_center_FSformat (line 26) [mesh_pial.vertices, mesh_pial.faces] = freesurfer_read_surf(pial);
ERROR: find_corresponding_center_FSformat did not complete successfully! Linux dn003 3.10.0-1160.88.1.el7.x86_64 #1 SMP Tue Mar 7 15:41:52 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux
recon-all -s sub-1001 exited with ERRORS at Wed Nov 22 14:59:33 EST 2023
How can I resolve the problem? Thank you for your consideration.
Best,
Daiki Sasabayashi _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/1lRqrZWdog5WP9oqfm7cn4StZIWloqn7SOh0W-TRkXCQsJE... Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.
Copy the attached matlab file into $FREESURFER/matlab/freesurfer_read_surf.m
On 11/24/2023 12:53 PM, 笹林大樹 wrote:
External Email - Use Caution
Dear Freesurfer experts,
I’m sorry, I would like to add some missing information about the following question.
OS: CentOS Linux 7 FS ver: fs7.1.0 Matlab ver: R2017a or R2022a
I would be grateful for your answer when you have time.
Best,
Daiki Sasabayashi
転送されたメッセージ:
*差出人: *笹林大樹 ds179@med.u-toyama.ac.jp *件名: **[Freesurfer] Errors in LGI command* *日付: *2023年11月22日 15:19:36 GMT-5 *宛先: *Freesurfer support list freesurfer@nmr.mgh.harvard.edu *返信先: *Freesurfer support list freesurfer@nmr.mgh.harvard.edu
External Email - Use Caution
Dear Freesurfer experts,
I have run the following command: *recon-all -s sub-1001 -localGI -no-isrunning*
However, I got the error message as below.
Warning: Input argument must be a character vector.
In ver (line 41) In freesurfer_read_surf (line 70) In
find_corresponding_center_FSformat (line 26) Error using fprintf Function is not defined for 'struct' inputs.
Error in freesurfer_read_surf (line 70) fprintf('FREESURFER_READ_SURF [v %s]\n',ver(11:15));
Error in find_corresponding_center_FSformat (line 26) [mesh_pial.vertices, mesh_pial.faces] = freesurfer_read_surf(pial);
ERROR: find_corresponding_center_FSformat did not complete successfully! Linux dn003 3.10.0-1160.88.1.el7.x86_64 #1 SMP Tue Mar 7 15:41:52 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux
recon-all -s sub-1001 exited with ERRORS at Wed Nov 22 14:59:33 EST 2023
How can I resolve the problem? Thank you for your consideration.
Best,
Daiki Sasabayashi _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
External Email - Use Caution
Dear Dr. Greve,
According to your advice, I could run the LGI command successfully. I greatly appreciate for your support!
Best, Daiki
2023/11/26 17:40、Douglas N. Greve dgreve@MGH.HARVARD.EDUのメール:
Copy the attached matlab file into $FREESURFER/matlab/freesurfer_read_surf.m
On 11/24/2023 12:53 PM, 笹林大樹 wrote:
External Email - Use CautionDear Freesurfer experts,
I’m sorry, I would like to add some missing information about the following question.
OS: CentOS Linux 7 FS ver: fs7.1.0 Matlab ver: R2017a or R2022a
I would be grateful for your answer when you have time.
Best,
Daiki Sasabayashi
転送されたメッセージ:
差出人: 笹林大樹 <ds179@med.u-toyama.ac.jp mailto:ds179@med.u-toyama.ac.jp> 件名: [Freesurfer] Errors in LGI command 日付: 2023年11月22日 15:19:36 GMT-5 宛先: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu mailto:freesurfer@nmr.mgh.harvard.edu> 返信先: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu mailto:freesurfer@nmr.mgh.harvard.edu>
External Email - Use CautionDear Freesurfer experts,
I have run the following command: recon-all -s sub-1001 -localGI -no-isrunning
However, I got the error message as below.
Warning: Input argument must be a character vector.
In ver (line 41) In freesurfer_read_surf (line 70) In find_corresponding_center_FSformat (line 26)
Error using fprintf Function is not defined for 'struct' inputs.
Error in freesurfer_read_surf (line 70) fprintf('FREESURFER_READ_SURF [v %s]\n',ver(11:15));
Error in find_corresponding_center_FSformat (line 26) [mesh_pial.vertices, mesh_pial.faces] = freesurfer_read_surf(pial);
ERROR: find_corresponding_center_FSformat did not complete successfully! Linux dn003 3.10.0-1160.88.1.el7.x86_64 #1 SMP Tue Mar 7 15:41:52 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux
recon-all -s sub-1001 exited with ERRORS at Wed Nov 22 14:59:33 EST 2023
How can I resolve the problem? Thank you for your consideration.
Best,
Daiki Sasabayashi _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/13nnR_UU4wRRg2SobbLtHMPFXH5faQpDdN0C4jDh8OJRMkK... https://secure-web.cisco.com/13nnR_UU4wRRg2SobbLtHMPFXH5faQpDdN0C4jDh8OJRMkKqBFWOT4vk_2VDUWWhcQo5pk-rsczW3_wSZ9A9R-Sm0vtvCVrCOI8LYoJKQ4p_urAJh9KxIm8hPcsu16trQIbs8RjgbUcViuqP_hy9CDVneojO6240yTnTjrJXRwhCsHlAwesytHKKDpEGdTW9H3QprmhDulos_zhTANXFjgGXP5_m854UPZJV8_ZewFTvIaHian_KQgiw6EosvCTke9VNXBtAS2XzZVxsDsdU4X8NOly9Sq2jCD7fhWUsvnaaeIMaePJOI_PXbLUQ1Lwx5/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/13nnR_UU4wRRg2SobbLtHMPFXH5faQpDdN0C4jDh8OJRMkK... https://secure-web.cisco.com/13nnR_UU4wRRg2SobbLtHMPFXH5faQpDdN0C4jDh8OJRMkKqBFWOT4vk_2VDUWWhcQo5pk-rsczW3_wSZ9A9R-Sm0vtvCVrCOI8LYoJKQ4p_urAJh9KxIm8hPcsu16trQIbs8RjgbUcViuqP_hy9CDVneojO6240yTnTjrJXRwhCsHlAwesytHKKDpEGdTW9H3QprmhDulos_zhTANXFjgGXP5_m854UPZJV8_ZewFTvIaHian_KQgiw6EosvCTke9VNXBtAS2XzZVxsDsdU4X8NOly9Sq2jCD7fhWUsvnaaeIMaePJOI_PXbLUQ1Lwx5/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer
<freesurfer_read_surf.m>_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/13nnR_UU4wRRg2SobbLtHMPFXH5faQpDdN0C4jDh8OJRMkK... The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at https://secure-web.cisco.com/1dR8SnIKpWkHwgrMCQCcjTzfrU2QSAhENoo2YDKaknAKEFJ... https://secure-web.cisco.com/1dR8SnIKpWkHwgrMCQCcjTzfrU2QSAhENoo2YDKaknAKEFJd7wr4At_t15t8Kw-DG_9wcRdEzNL4vWwjeGw0gJXgwAsx8_wcg0TqAsGPgh74zhNdl3v3BJA4rsxpx1CFc8ncR4CrlIR5HfSkO6d5zyR8vF3tFvUlgBg5_HIRsl5HVhvX2vxiveNGwJg2e5-1X-vaVEmnhlpAryGVDrZwbgsFptSmiIr4_vGu9p1nwhfKoQ_jpcy7L1BcPiJPSToAw0V72LjUKPzgZh8eU0O3WggYcsyqWDfZOoVbU9TF6n2FH8R6wlXr51YDmIKeP-l7a/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline . Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.
freesurfer@nmr.mgh.harvard.edu
-
Douglas N. Greve -
笹林大樹