External Email - Use Caution
Dear FreeSurfer Developers,
I'm attempting to use the mri_segment_hypothalamic_subunits tool on subjects that have been analyzed with recon-all as described on the wiki page (https://secure-web.cisco.com/1A9dGY6OywLZ30vDfBWiSZqvoBp25mO3nhNd6jDNfiis58g...), but I received the following error when I run the mri_segment_hypothalamic_subunits command (mri_segment_hypothalamic_subunits --s):
(tensorflow) brain@neurodebian:/usr/local/apps/freesurfer/subjects$ mri_segment_hypothalamic_subunits --s bert using 1 thread processing 1/1 *** Error in `/usr/local/apps/freesurfer/python/bin/python3': munmap_chunk(): invalid pointer: 0x00007fa1707b3400 *** Aborted
I would be appreciated if you can help me solve this problem.
Thank you very much!
Regrads,
From Benjamin Billot: Yep, that’s just an out of memory issue for the GPU. He/she can use the cropping flag, or use the cpu flag.
On 4/18/2022 9:58 AM, Chen ZY wrote:
External Email - Use Caution
Dear FreeSurfer Developers,
I'm attempting to use the mri_segment_hypothalamic_subunits tool on subjects that have been analyzed with recon-all as described on the wiki page
(https://surfer.nmr.mgh.harvard.edu/fswiki/HypothalamicSubunits), but I received the following error when I run the mri_segment_hypothalamic_subunits
command (mri_segment_hypothalamic_subunits --s):
(tensorflow) brain@neurodebian:/usr/local/apps/freesurfer/subjects$ mri_segment_hypothalamic_subunits --s bert
using 1 thread
processing 1/1
*** Error in `/usr/local/apps/freesurfer/python/bin/python3': munmap_chunk(): invalid pointer: 0x00007fa1707b3400 ***
Aborted
I would be appreciated if you can help me solve this problem.
Thank you very much!
Regrads,
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
-
Chen ZY -
Douglas N. Greve