Yes, I think it is only available in the new v6.0 release. You are still running 5.3.

On Jun 3, 2017, at 9:57 PM, Rita Elena Loiotile rloiotile@gmail.com wrote:

Hi Ruopeng,

Thanks for the suggestion. I tried this but freesurfer complained "Unrecognized sub-option flag 'overlay_color'." Perhaps you have a more recent version of freesurfer/freeview?

I'm currently running the following: freesurfer-x86_64-unknown-linux-gnu-stable5-20130513 with Freeview version 1.0, Build May 13, 2013. If necessary, I'll upgrade.

Thanks!

On Sat, Jun 3, 2017 at 12:13 PM, Ruopeng Wang <rpwang@nmr.mgh.harvard.edu mailto:rpwang@nmr.mgh.harvard.edu> wrote: You can set truncate like this from command-line:

freeview -f surface_filename:overlay=overlay_filename:overlay_color=truncate

Best, Ruopeng

...

On Jun 3, 2017, at 1:03 AM, Rita Elena Loiotile <rloiotile@gmail.com mailto:rloiotile@gmail.com> wrote:

Hi,

Is there an easy command to only load positive values of an overlay in Freeview. I know in tksurfer it's truncphaseflag. Freeview does have the "truncate" option in the surface pane of the GUI. But, I don't see a command line flag. I'm hoping there's a way that's not in the help documentation.

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