both of what? Sorry, it looks like the thread was garbled below or somehow the digest got into it. Try responding to the email that I sent to keep things in order

On 05/09/2014 05:09 PM, Sherryse Corrow wrote:

Thanks Douglas. Yes, both of those exist.

-- Sherryse Corrow, Ph.D. / Postdotoral Fellow Human Vision and Eye Movement Lab Department of Ophthalmology & Visual Sciences UBC/VGH Eye Care Centre 360A-2550 Willow Street Vancouver, BC, V5Z 3N9 Tel: 604-875-4111 ext 67672

Cell: 604-315-6717

sherryse.corrow@eyecarecentre.org

On 5/7/14, 6:54 P, "freesurfer-request@nmr.mgh.harvard.edu" freesurfer-request@nmr.mgh.harvard.du wrote:

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Today's Topics:

1. Re: Viewing functional data on the inflated brain (Sherryse Corrow)
2. Re: vertex-wise cortical thickness and whole brain labeling (Douglas N Greve)
3. Re: Question about Qdec p-values (Douglas N Greve)
4. Re: Quesion about lobar volumes (Douglas N Greve)
5. Re: Viewing functional data on the inflated brain (Douglas N Greve)
6. Re: vertex-wie cortical thickness and whole brain labeling (Bruce Fischl)
7. Re: aseg.stats volume mismatch (Gabor Perlaki)
8. Re: aseg.stats volume mismatch (Bruce Fischl)
9. Covert processed RS time series to MNI152 (Paul Beach)
10. Re: Quesion about lobar volume (pfotiad@nmr.mgh.harvard.edu)
11. Re: Quesion about lobar volumes (Douglas N Greve)
12. Re: Quesion about lobar volumes (pfotiad@nmr.mgh.harvard.edu)
13. Re: LOOK FOR HELP! (???)

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Message: 1 Date: Wed, 7 May 2014 10:59:55 -0700 From: Sheryse Corrow sherryse.corrow@eyecarecentre.org Subject: Re: [Freesurfer] Viewing functional data on the inflated brain To: "freesurfer@nmr.mgh.harvard.edu" freesurfer@nmr.mgh.harvard.edu>Message-ID: CF8FC0ED.AE9A%sherryse.corrow@eyecarecentre.org Content-Type: text/plain; charset="windows-1252"

Tanks Douglas. We tried that . . . The registration matrix that we need is not created. Here is the output log file (attache). I am a bit new to this so I am hoping it has the information you need. After taking a quick glance at the log file, we noticed there are errors in the log file.

Step by step, this is what we did after we an recon-all: Reg-feat2anat ?feat OurFeatDirectory.feat ?subject P209

When we open the folder experiment.feat/reg/freesurfer, there is no anat2exf.register.dat file. However, there is a file called: anat2exf.register.dat.init.

Thanks, Sherryse -- Sherryse Corrow, Ph.D. / Postdoctoral Fellow Human Vision and Eye Movement Lab Department of Ophthalmoogy & Visual Sciences UBC/VGH Eye Care Centre 360A-2550 Willow Street Vancouver, BC, V5Z 3N9 Tel: 604-875-4111 ext 67672

Cell: 604-315-6717

sherryse.corrow@eyecarecentre.org

On 5/6/14, 9:00 AM, "freesurfer-request@nmr.mgh.harvard.edu" freesurfer-request@nmr.mgh.harvard.edu wrote:

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Re: Viewing functional data on the inflated brain