error MRS voxel as seed in FS-FAST - Freesurfer

4 Nov 2015

      Hi list, this error is still occurring:
mri_convert $SUBJECTS_DIR/subj/mri/MRS_MASK.nii.gz 
$SUBJECTS_DIR//subj/mri/MRS_MASK.mgz
fcseed-config -segid 1 -seg $SUBJECTS_DIR//subj/mri/MRS_MASK.mgz -fsd 
rest -mean -cfg MRS_MASK.config
fcseed-sess -s -cfg MRS_MASK.config
During
fcseed-sess -s subj -cfg MRS_MASK.config
Voxel Volume is 64.5752 mm^3
Generating list of segmentation ids
Found   1 segmentations
Computing statistics for each segmentation
  0     1                                          0       0.000
MRIalloc(0, 1, 1): bad parm
Reporting on   0 segmentations
Computing spatial average of each frame
Writing to /Applications/freesurfer/subjects/fMRI/sub/rest/001/tmp.
fcseed-sess.97908/avgwf.mgh
Segmentation fault
I have read your previous message and you can check the MRS voxel 
features.
MRS voxel mask is in subj directory where I have run recon all -all.
data_type      FLOAT32
dim1           256
dim2           256
dim3           256
dim4           1
datatype       16
pixdim1        1.000000
pixdim2        1.000000
pixdim3        1.000000
pixdim4        0.010747
cal_max        0.0000
cal_min        0.0000
file_type      NIFTI-1+
The features are same of other subject that runs fine.
data_type      FLOAT32
dim1           256
dim2           256
dim3           256
dim4           1
datatype       16
pixdim1        1.000000
pixdim2        1.000000
pixdim3        1.000000
pixdim4        0.010747
cal_max        0.0000
cal_min        0.0000
file_type      NIFTI-1+
Thank you very much.
Stefano
...
----Messaggio originale----
Da: stdp82@virgilio.it
Data: 16-ott-2015 23.15
A: freesurfer@nmr.mgh.harvard.edu
Ogg: [Freesurfer] R: Re:  R: import FS-FAST results in FSL
I'd like to open with FSLview the sig.nii.gz which is produced by 
selxavg3-sess.
If I use mri_surf2vol, which is the template to added in --template? 
It should be in Tailairach space? Where can I find the template that
I
...
should added?
Thanks,
Stefano
subj/rest/fc.seed.surf.lh/L_seed/sig.nii.gz 
data_type      FLOAT32
dim1           27307
dim2           1
dim3           6
dim4           1
datatype       16
pixdim1        1.000000
pixdim2        1.000000
pixdim3        1.000000
pixdim4        1100.000000
cal_max        49.1815
cal_min        -12.3855
file_type      NIFTI-1+
Thanks,
Stefano
...
----Messaggio originale----
Da: greve@nmr.mgh.harvard.edu
Data: 29-set-2015 22.09
A: freesurfer@nmr.mgh.harvard.edu
Ogg: Re: [Freesurfer] R: import FS-FAST results in FSL
Do you mean surface-based analysis? You'd have to put them back
into
...
the
...
volume using mri_surf2vol, write them out as nifti and then run
fslview
...
on them
On 09/29/2015 11:17 AM, stdp82@virgilio.it wrote:
...
Hi list,

I would like to import FS-FAST results (conjunction maps) in 

FSL,
...
...
opening them by fslview.
Could you provide me any suggestion?

Thank you very much
Best regards,

Stefano

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