External Email - Use Caution
Hello Freesurfer experts,
I have a general question regarding the HIP subfield segmentation 6.0. Is it in general still recommended to edit the resulting HIP segmentation?
I am asking because at 1mm resolution I am not really able to determine which voxel should be what subregion? If editing is still recommended what file and what method should be used for HIP editing? I attached two images as an example, which I think could benefit from some editing.
Thank you very much in advance!
[image: Screen Shot 2019-07-23 at 12.54.41 PM.png] [image: Screen Shot 2019-07-23 at 12.58.03 PM.png]
External Email - Use Caution
Hello Freesurfer experts,
I have a general question regarding the HIP subfield segmentation 6.0. Is it in general still recommended to edit the resulting HIP segmentation?
I am asking because at 1mm resolution I am not really able to determine which voxel should be what subregion? If editing is still recommended what file and what method should be used for HIP editing? I attached two images as an example, which I think could benefit from some editing.
Thank you very much in advance!
[image: Screen Shot 2019-07-23 at 12.54.41 PM.png] [image: Screen Shot 2019-07-23 at 12.58.03 PM.png]
On Tue, Jul 23, 2019 at 1:10 PM Caroline Chwiesko cchwiesk@uci.edu wrote:
Hello Freesurfer experts,
I have a general question regarding the HIP subfield segmentation 6.0. Is it in general still recommended to edit the resulting HIP segmentation?
I am asking because at 1mm resolution I am not really able to determine which voxel should be what subregion? If editing is still recommended what file and what method should be used for HIP editing? I attached two images as an example, which I think could benefit from some editing.
Thank you very much in advance!
[image: Screen Shot 2019-07-23 at 12.54.41 PM.png] [image: Screen Shot 2019-07-23 at 12.58.03 PM.png]
External Email - Use Caution
I definitely wouldn’t… if anything, I would QC and leave aside subjects where the segmentation has failed. Cheers, /Eugenio
-- Juan Eugenio Iglesias Senior research fellow CMIC (UCL), MGH (HMS) and CSAIL (MIT) http://www.jeiglesias.com
From: freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Caroline Chwiesko cchwiesk@uci.edu Reply-To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Date: Friday, 26 July 2019 at 17:02 To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Question regarding editing hippocampal subfield segmentation freesurfer 6.0
External Email - Use Caution Hello Freesurfer experts,
I have a general question regarding the HIP subfield segmentation 6.0. Is it in general still recommended to edit the resulting HIP segmentation?
I am asking because at 1mm resolution I am not really able to determine which voxel should be what subregion? If editing is still recommended what file and what method should be used for HIP editing? I attached two images as an example, which I think could benefit from some editing.
Thank you very much in advance!
[Screen Shot 2019-07-23 at 12.54.41 PM.png] [Screen Shot 2019-07-23 at 12.58.03 PM.png]
On Tue, Jul 23, 2019 at 1:10 PM Caroline Chwiesko <cchwiesk@uci.edumailto:cchwiesk@uci.edu> wrote: Hello Freesurfer experts,
I have a general question regarding the HIP subfield segmentation 6.0. Is it in general still recommended to edit the resulting HIP segmentation?
I am asking because at 1mm resolution I am not really able to determine which voxel should be what subregion? If editing is still recommended what file and what method should be used for HIP editing? I attached two images as an example, which I think could benefit from some editing.
Thank you very much in advance!
[Screen Shot 2019-07-23 at 12.54.41 PM.png] [Screen Shot 2019-07-23 at 12.58.03 PM.png]
freesurfer@nmr.mgh.harvard.edu
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Caroline Chwiesko -
Iglesias Gonzalez, Eugenio