Hi Linn I'm not sure I understand, but if you can paste them into the aseg.mgz as hypointensities I think things should work properly

cheers Bruce On Mon, 3 Feb 2014, Linn Christin Bonaventure Norbom wrote:

Hi,   I would like to include unregistered hypo-intense lesions into white matter (as now they are excluded from cortex, and not registered as anything) without transforming the lesion from hypo-intense to normal (110). Is it possible to include these areas in white matter and additionally keep the statistic volume of these areas as hypo-intense-wm in the aseg.stats?     Thank you in advance, Regards Linn Norbom