Hi Doug. The missing files are NOT in $FREESURFER_HOME/bin; So, I guess that's why they are not found even though the path is set up in the system PATH variable. Suggestions? Fidel
Are the missing files in $FREESURFER_HOME/bin and is that path in your system PATH variable?
On 07/26/2012 01:29 PM, Fidel Vila wrote:
Thanks for your prompt reply, Doug.
I've been checking and following the wiki instructions with regards
to
setting up proper paths, and I could not find an obvious (to me) problem there.
I attach a file with things I have tried and issues I have found.
Further advice will be greatly appreciate it.
Many thanks,
Fidel
On 25-Jul-12, at 8:22 PM, Douglas Greve wrote:
did you set up your environment so that your path environment variable has all the proper paths in it? Look at the wiki for instructions. doug
On 7/25/12 7:57 PM, Fidel Vila wrote:
Hi Freesurfer experts,
I recently installed FS (PowerPC architecture version available on FS website) on a Mac OS X 10.4.11 and I get the attached output error when running recon-all.
Advice on how to troubleshoot this would be appreciate.
Thanks,
Fidel
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Try re-installing. Make sure you have enough disk space. doug
On 07/30/2012 12:43 AM, Fidel Vila wrote:
Hi Doug. The missing files are NOT in $FREESURFER_HOME/bin; So, I guess that's why they are not found even though the path is set up in the system PATH variable. Suggestions? Fidel Are the missing files in $FREESURFER_HOME/bin and is that path in your system PATH variable?
On 07/26/2012 01:29 PM, Fidel Vila wrote:
Thanks for your prompt reply, Doug.
I've been checking and following the wiki instructions with regards to setting up proper paths, and I could not find an obvious (to me) problem there.
I attach a file with things I have tried and issues I have found.
Further advice will be greatly appreciate it.
Many thanks,
Fidel
On 25-Jul-12, at 8:22 PM, Douglas Greve wrote:
did you set up your environment so that your path environment variable has all the proper paths in it? Look at the wiki for instructions. doug
On 7/25/12 7:57 PM, Fidel Vila wrote:
Hi Freesurfer experts,
I recently installed FS (PowerPC architecture version available on FS website) on a Mac OS X 10.4.11 and I get the attached output error when running recon-all.
Advice on how to troubleshoot this would be appreciate.
Thanks,
Fidel
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop:www.nmr.mgh.harvard.edu/facility/filedrop/index.html http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Fidel Vila-Rodriguez, MD, FRCPC Clinical Assistant Professor, Faculty of Medicine, Dpt. of Psychiatry, University of British Columbia UBC Clinician Investigator Fellow UBC Graduate Program in Neuroscience Ph.D Candidate
BC Mental Health and Addiction Research Institute A3-128-4, 938 West 28th Ave Vancouver, BC V5Z 4H4 Tel: 604-875-2000 Ext. 4732 Fax: 604-875-3871
freesurfer@nmr.mgh.harvard.edu
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Douglas N Greve -
Fidel Vila