When you run mri_glmfit-sim, you can pass it your own annotation (--annnot). Would that do what you want?

On 09/13/2018 01:02 PM, Mcnorgan, Christopher wrote:

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I’ve got a custom .annot file covering the entire cortical surface in fsaverage space, and I wish to see which labels overlap with an overlay statistical contrast volume generated by mri_glmfit. I extracted the vertex indices from my custom .annot file, and from the cache.*.sig.ocn.annot file produced by mri_glmfitsim and using a combination of other tools to parse and query the sets of vertices in a relational database, I found the custom .annot label names corresponding to the overlapping vertices. The process seems to have worked, but I was wondering if there already existed any FreeSurfer tools to accomplish the same task?

Thanks, Chris

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• Chris McNorgan
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• University at Buffalo,
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