New subject: mris_anatomical_stats error: missing ", " in "Measure Cortex, CortexVol Total cortical gray matter volume, ..."

29 Aug 2017


      Hi!
It seems that in FreeSurfer 6, the comma between “CortexVol” and “Total cortical gray matter volume” is missing
here’s the relevant part of one of my stats-files:
# Table of FreeSurfer cortical parcellation anatomical statistics 
# 
# CreationTime 2017/08/23-20:19:44-GMT
# generating_program /software/easybuild/software/FreeSurfer/6.0.0-centos6_x86_64/bin/mris_anatomical_stats
# cvs_version $Id: mris_anatomical_stats.c,v 1.79 2016/03/14 15:15:34 greve Exp $
# mrisurf.c-cvs_version $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $
# cmdline /software/easybuild/software/FreeSurfer/6.0.0-centos6_x86_64/bin/mris_anatomical_stats -mgz -cortex /data/datasets/pediatric/CLG//sub-A00057725_ses-CLG2/label/lh.cortex.label -a /data/datasets/pediatric/CLG//sub-A00057725_ses-CLG2/label/lh.aparc.a2009s.annot -b -f /data/datasets/pediatric/CLG//sub-A00057725_ses-CLG2/stats/lh.aparc.a2009s.pial.stats sub-A00057725_ses-CLG2 lh pial 
# sysname  Linux
# hostname cn4.cir.meduniwien.ac.at http://cn4.cir.meduniwien.ac.at/
# machine  x86_64
# user     ernst
# 
# SUBJECTS_DIR /data/datasets/pediatric/CLG/
# anatomy_type surface
# subjectname sub-A00057725_ses-CLG2
# hemi lh
# AnnotationFile /data/datasets/pediatric/CLG//sub-A00057725_ses-CLG2/label/lh.aparc.a2009s.annot
# AnnotationFileTimeStamp 2017/08/23 22:18:44
# Measure Cortex, NumVert, Number of Vertices, 121790, unitless
# Measure Cortex, PialSurfArea, Pial Surface Total Area, 105158, mm^2
# Measure Cortex, MeanThickness, Mean Thickness, 2.80672, mm
# Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1051285.000000, mm^3
# Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1040194.000000, mm^3
# Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1039128.584538, mm^3
# Measure Cortex, CortexVol Total cortical gray matter volume, 532907.136355, mm^3
# Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 926570.584538, mm^3
# Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 918874.584538, mm^3
# Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1254280.104289, mm^3
cheers,
Ernst
~
Ernst Schwartz
Computational Image Research (CIR) Lab
Department of Biomedical Imaging and Image-guided Therapy
Medical University Vienna, Austria
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