what is this causing an error in?
On 08/29/2017 06:50 AM, Ernst Schwartz wrote:
Hi!
It seems that in FreeSurfer 6, the comma between “CortexVol” and “Total cortical gray matter volume” is missing
here’s the relevant part of one of my stats-files:
# Table of FreeSurfer cortical parcellation anatomical statistics # # CreationTime 2017/08/23-20:19:44-GMT # generating_program /software/easybuild/software/FreeSurfer/6.0.0-centos6_x86_64/bin/mris_anatomical_stats # cvs_version $Id: mris_anatomical_stats.c,v 1.79 2016/03/14 15:15:34 greve Exp $ # mrisurf.c-cvs_version $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ # cmdline /software/easybuild/software/FreeSurfer/6.0.0-centos6_x86_64/bin/mris_anatomical_stats -mgz -cortex /data/datasets/pediatric/CLG//sub-A00057725_ses-CLG2/label/lh.cortex.label -a /data/datasets/pediatric/CLG//sub-A00057725_ses-CLG2/label/lh.aparc.a2009s.annot -b -f /data/datasets/pediatric/CLG//sub-A00057725_ses-CLG2/stats/lh.aparc.a2009s.pial.stats sub-A00057725_ses-CLG2 lh pial # sysname Linux # hostname cn4.cir.meduniwien.ac.at http://cn4.cir.meduniwien.ac.at # machine x86_64 # user ernst # # SUBJECTS_DIR /data/datasets/pediatric/CLG/ # anatomy_type surface # subjectname sub-A00057725_ses-CLG2 # hemi lh # AnnotationFile /data/datasets/pediatric/CLG//sub-A00057725_ses-CLG2/label/lh.aparc.a2009s.annot # AnnotationFileTimeStamp 2017/08/23 22:18:44 # Measure Cortex, NumVert, Number of Vertices, 121790, unitless # Measure Cortex, PialSurfArea, Pial Surface Total Area, 105158, mm^2 # Measure Cortex, MeanThickness, Mean Thickness, 2.80672, mm # Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1051285.000000, mm^3 # Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1040194.000000, mm^3 # Measure BrainSegNotVentSurf, BrainSegVolNotVentSurf, Brain Segmentation Volume Without Ventricles from Surf, 1039128.584538, mm^3 # Measure Cortex, *CortexVol Total* cortical gray matter volume, 532907.136355, mm^3 # Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 926570.584538, mm^3 # Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 918874.584538, mm^3 # Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1254280.104289, mm^3
cheers, Ernst
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Ernst Schwartz Computational Image Research (CIR) Lab Department of Biomedical Imaging and Image-guided Therapy Medical University Vienna, Austria
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