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Hi Rana,

The samseg tool in FreeSurfer will segment some non-brain tissues. If that's not sufficient for your needs, you can also check out a more specialized version of samseg distributed with the new/upcoming version of SimNIBS -- cf. https://secure-web.cisco.com/1m3W8M8ehpcpJYwGbSDVl-yyFLAPwvay_pIXCHQzlJNA-Ul... for details.

Hope this helps,

Koen

On Wed, Sep 29, 2021 at 3:09 PM Banik, Rana rana.banik@vanderbilt.edu wrote:

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Hello All,

I am a beginner in freesurfer. Was looking for resources to perform volumetric segmentation(not surface mesh) for non-brain tissues like Muscle-skin, fat from T1-w MR images. Is that feature available in freesurfer? I have used FSL for WM, GM, CSF segmentation.

Also looking to protect the inter-subject variability without registering the head volumes to MNI or another atlas.

*-Rana*

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