External Email - Use Caution
Hi,
Is there any way to clear background for a volume file from the command line. I am attempting to overlay electrodes onto a T1 image, and I would like for the background of the electrode files to be clear when they are loaded from a script.
Thanks,
Aditya Datta Staff Research Associate II UCLA Department of Neurosurgery 670 Charles E. Young Dr. South, CHS 63-360 Los Angeles , CA 90095 650-435-9337
________________________________
UCLA HEALTH SCIENCES IMPORTANT WARNING: This email (and any attachments) is only intended for the use of the person or entity to which it is addressed, and may contain information that is privileged and confidential. You, the recipient, are obligated to maintain it in a safe, secure and confidential manner. Unauthorized redisclosure or failure to maintain confidentiality may subject you to federal and state penalties. If you are not the intended recipient, please immediately notify us by return email, and delete this message from your computer.
Not sure what you mean by the background. You can try binarizing the electrodes (mri_binarize), then load it as a segmentation.
On 12/8/2023 5:47 PM, Datta, Aditya wrote:
External Email - Use Caution
Hi,
Is there any way to clear background for a volume file from the command line. I am attempting to overlay electrodes onto a T1 image, and I would like for the background of the electrode files to be clear when they are loaded from a script.
Thanks,
*Aditya Datta* /Staff Research Associate II/ /UCLA Department of Neurosurgery/ /670 Charles E. Young Dr. South, CHS 63-360/ /Los Angeles , CA 90095/ /650-435-9337/ / /
UCLA HEALTH SCIENCES IMPORTANT WARNING: This email (and any attachments) is only intended for the use of the person or entity to which it is addressed, and may contain information that is privileged and confidential. You, the recipient, are obligated to maintain it in a safe, secure and confidential manner. Unauthorized redisclosure or failure to maintain confidentiality may subject you to federal and state penalties. If you are not the intended recipient, please immediately notify us by return email, and delete this message from your computer.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
-
Datta, Aditya -
Douglas N. Greve