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Hello,

I am attempting to install FreeSurfer on a Centos 7 workstation using the tcsh shell. Below are the contents of my .cshrc file. Should $FREESURFER_HOME/bin be automatically added to the PATH? I tried rebooting, and it still is not adding it to the PATH. My environment variables appear to be set correctly because I see this when opening a new terminal. I also tried modifying the .cshrc file to add the directory to the PATH manually, but it still will not stick after rebooting.

-------- freesurfer-linux-centos7_x86_64-7.4.1-20230613-7eb8460 -------- Setting up environment for FreeSurfer/FS-FAST (and FSL) FREESURFER_HOME /usr/local/freesurfer/7.4.1-1 FSFAST_HOME /usr/local/freesurfer/7.4.1-1/fsfast FSF_OUTPUT_FORMAT nii.gz SUBJECTS_DIR /usr/local/freesurfer/7.4.1-1/subjects MNI_DIR /usr/local/freesurfer/7.4.1-1/mni FSL_DIR /usr/local/FSL/fsl_6_0_7_4 [cogdmd@cari6 ~]$

Thanks, Eddie

############################################################# umask 002

setenv PATH /usr/local/cuda-9.1/bin:$PATH setenv LD_LIBRARY_PATH /usr/local/cuda-9.1/lib64

# auto-inserted by @update.afni.binaries : set path = ( $path /home/cogdmd/abin ) setenv R_LIBS ~/R

#FSL Setup setenv FSLDIR /usr/local/FSL/fsl_6_0_7_4 setenv PATH ${FSLDIR}/share/fsl/bin:${PATH} source ${FSLDIR}/etc/fslconf/fsl.csh

#Freesurfer Setup setenv FREESURFER_HOME /usr/local/freesurfer/7.4.1-1 setenv SUBJECTS_DIR $FREESURFER_HOME/subjects source $FREESURFER_HOME/SetUpFreeSurfer.csh

alias spm12 'matlab -r "addpath /usr/local/SPM/spm12_r7771/spm12; spm fMRI"' alias conn 'matlab -r "addpath /usr/local/SPM/spm12_r7771/spm12; addpath /usr/local/SPM/conn; conn"'

setenv PATH /home/cogdmd/anaconda3/bin:$PATH

setenv ANTSPATH /home/cogdmd/ants-2.4.1/bin setenv PATH ${ANTSPATH}:${PATH}

setenv PATH /home/cogdmd/.lcmodel:$PATH ############################################################