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Dott. Massimo VALERIO

Neuropsichiatra Infantile SSD Neurologia Pediatrica Dipartimento di Patologia e Cura del Bambino Regina Margherita A.O.U Citta della Salute e della Scienza della Citta di Torino Presidio Ospedale Infantile Regina Margherita Piazza Polonia 94, 10126 Torino Tel: 011 3135248 Fax: 011 3135439 Email: massimo.valerio@unito.it

Il giorno dom 8 ott 2023 alle ore 16:22 Massimo Valerio < massimo.valerio@unito.it> ha scritto:

Hello FreeSurfer Developers,

I'm attempting to compute the recon-all of T1 3D of my patient. ERROR:

\n mri_cc -aseg aseg.auto_noCCseg.mgz -o aseg.auto.mgz -lta /Applications/freesurfer/subjects/PZDALENE/mri/transforms/cc_up.lta PZDALENE \n

will read input aseg from aseg.auto_noCCseg.mgz

writing aseg with cc labels to aseg.auto.mgz

will write lta as /Applications/freesurfer/subjects/PZDALENE/mri/transforms/cc_up.lta

reading aseg from /Applications/freesurfer/subjects/PZDALENE/mri/aseg.auto_noCCseg.mgz

reading norm from /Applications/freesurfer/subjects/PZDALENE/mri/norm.mgz

39269 voxels in left wm, 29817 in right wm, xrange [112, 141]

searching rotation angles z=[-7 7], y=[ 9 23]

searching scale 1 Z rot 5.0 global minimum found at slice 127.0, rotations (14.74, -1.72)

final transformation (x=127.0, yr=14.745, zr=-1.723):

0.96663 0.03006 0.25439 -31.60547;

-0.02907 0.99955 -0.00765 15.74752;

-0.25451 0.00000 0.96707 33.63651;

0.00000 0.00000 0.00000 1.00000;

mri_cc: no WM voxels found with norm > 40 -- check skull stripping

No such file or directory

Darwin MBPdiNeirurgia4.fritz.box 21.6.0 Darwin Kernel Version 21.6.0: Fri Sep 15 16:17:23 PDT 2023; root:xnu-8020.240.18.703.5~1/RELEASE_X86_64 x86_64

recon-all -s PZDALENE exited with ERRORS at Sun Oct 8 02:34:07 CEST 2023

I've searched the list and no similar errors have been reported. Does anyone have any thoughts on how to trouble-shoot this one? Also, Ive attached the recon-all.log in case it's of any use.

1. FreeSurfer version: freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c
2. Platform: MacOs Monterey 12.7
3. uname -a: Darwin MBPdiNeirurgia4.fritz.box 21.6.0 Darwin Kernel

Version 21.6.0: Fri Sep 15 16:17:23 PDT 2023; root:xnu-8020.240.18.703.5~1/RELEASE_X86_64 x86_64 4) recon-all.log: see attached

Dott. Massimo VALERIO

Neuropsichiatra Infantile SSD Neurologia Pediatrica Dipartimento di Patologia e Cura del Bambino Regina Margherita A.O.U Citta della Salute e della Scienza della Citta di Torino Presidio Ospedale Infantile Regina Margherita Piazza Polonia 94, 10126 Torino Tel: 011 3135248 Fax: 011 3135439 Email: massimo.valerio@unito.it

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