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Dear experts, Thank u very much for all the help so far I have mint19 on my system and I have installed FreeSurfer on it. when I run a command like "mri_convert" it is ok. But when I run "recon-all" and some other commands, I see the error below :
bash: /usr/local/freesurfer/bin/recon-all: /bin/tcsh: bad interpreter: No such file or directory by the way my default setup file is .bashrc. I really dunno what the problem is.I would be grateful if u could help me. Cheers, Maedeh
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Sounds like you do not have the tcsh shell installed on your system. There is no need to change your default shell from bash to tcsh, but you need tcsh installed for FreeSurfer to work.
Have your system admin install it. Since Mint is Debian-based, this should do it:
sudo apt-get install tcsh
Best,
Tim
On December 3, 2018 at 9:26 AM Maedeh Khalilian M.Khalilian@sutech.ac.ir wrote:
External Email - Use CautionDear experts, Thank u very much for all the help so far I have mint19 on my system and I have installed FreeSurfer on it. when I run a command like "mri_convert" it is ok. But when I run "recon-all" and some other commands, I see the error below :
bash: /usr/local/freesurfer/bin/recon-all: /bin/tcsh: bad interpreter: No such file or directory by the way my default setup file is .bashrc. I really dunno what the problem is.I would be grateful if u could help me. Cheers, Maedeh_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Dr. Tim Schäfer Postdoc Computational Neuroimaging Department of Child and Adolescent Psychiatry, Psychosomatics and Psychotherapy University Hospital Frankfurt, Goethe University Frankfurt am Main, Germany
freesurfer@nmr.mgh.harvard.edu