External Email - Use Caution
Dear experts
I met a problem during manual editing. My version is 5.3. Following FS tutorial, freeview process was run, which loaded T1, brainmask and apar+aseg images. Then, I clicked 'voxel edit', checked 'recon-edit' and clicked a part of image which had been excluded from cortex (outside the pial line). I saved it and also re-ran the recon-all process. The saved images were as follows. I compared the values before and after editing, but, the values of total cortical volume, e-TIV and the volume of temporal pole and sup temporal gyrus, were not changed. I have no idea whether some steps were skipped and why my editing did not reflect the numerical values of this areas.
Thanks always.
Sincerely yours Kyung
Hi Kyung
it's impossible to tell what is going on from a single slice. Typically the pial surface doesn't settle at the correct spot because the underlying white is also off. If you tar and gzip the entire subject dir and upload it to out ftp site together with a set of coordinates that you think are incorrect we will take a look
cheers Bruce On Thu, 29 Nov 2018, 박경일 wrote:
External Email - Use Caution
Dear experts I met a problem during manual editing. My version is 5.3. Following FS tutorial, freeview process was run, which loaded T1, brainmask and apar+aseg images. Then, I clicked 'voxel edit', checked 'recon-edit' and clicked a part of image which had been excluded from cortex (outside the pial line). I saved it and also re-ran the recon-all process. The saved images were as follows. I compared the values before and after editing, but, the values of total cortical volume, e-TIV and the volume of temporal pole and sup temporal gyrus, were not changed. I have no idea whether some steps were skipped and why my editing did not reflect the numerical values of this areas.
Thanks always.
Sincerely yours Kyung
External Email - Use Caution
Thanks for you quick reply. I am uploading a compressed file to filedrop (example1.zip). Which email should be filled up in recipients's email to reach you?
Kyung
2018년 11월 30일 (금) 오전 12:34, Bruce Fischl fischl@nmr.mgh.harvard.edu님이 작성:
Hi Kyung
it's impossible to tell what is going on from a single slice. Typically the pial surface doesn't settle at the correct spot because the underlying white is also off. If you tar and gzip the entire subject dir and upload it to out ftp site together with a set of coordinates that you think are incorrect we will take a look
cheers Bruce On Thu, 29 Nov 2018, 박경일 wrote:
External Email - Use CautionDear experts I met a problem during manual editing. My version is 5.3. Following FS tutorial, freeview process was run, which loaded T1,
brainmask and apar+aseg images.
Then, I clicked 'voxel edit', checked 'recon-edit' and clicked a part of
image which had been excluded from
cortex (outside the pial line). I saved it and also re-ran the recon-all
process. The saved images were as
follows. I compared the values before and after editing, but, the
values of total cortical volume, e-TIV
and the volume of temporal pole and sup temporal gyrus, were not changed. I have no idea whether some steps were skipped and why my editing did
not reflect the numerical values of
this areas.
Thanks always.
Sincerely yours Kyung
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
External Email - Use Caution
---------- Forwarded message --------- From: 박경일 ideopki@gmail.com Date: 2018년 12월 1일 (토) 오전 11:27 Subject: Re: [Freesurfer] trouble in manual editing of pial surface To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu
Thanks for you quick reply. I am uploading a compressed file to filedrop (example1.zip). Which email should be filled up in recipients's email to reach you?
Kyung
2018년 11월 30일 (금) 오전 12:34, Bruce Fischl fischl@nmr.mgh.harvard.edu님이 작성:
Hi Kyung
it's impossible to tell what is going on from a single slice. Typically the pial surface doesn't settle at the correct spot because the underlying white is also off. If you tar and gzip the entire subject dir and upload it to out ftp site together with a set of coordinates that you think are incorrect we will take a look
cheers Bruce On Thu, 29 Nov 2018, 박경일 wrote:
External Email - Use CautionDear experts I met a problem during manual editing. My version is 5.3. Following FS tutorial, freeview process was run, which loaded T1,
brainmask and apar+aseg images.
Then, I clicked 'voxel edit', checked 'recon-edit' and clicked a part of
image which had been excluded from
cortex (outside the pial line). I saved it and also re-ran the recon-all
process. The saved images were as
follows. I compared the values before and after editing, but, the
values of total cortical volume, e-TIV
and the volume of temporal pole and sup temporal gyrus, were not changed. I have no idea whether some steps were skipped and why my editing did
not reflect the numerical values of
this areas.
Thanks always.
Sincerely yours Kyung
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
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Bruce Fischl -
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