External Email - Use Caution
Hello Shrabani, It looks like you do not have tcsh installed on your machine to run recon-all which is a tcsh script, If you are using RedHat/CentOS linux, $ sudo yum install tcsh Fedora linux $ sudo dnf install tcsh Ubuntu/debian linux, $ sudo apt-get install tcsh I would also probably install csh the same way as well. - R.
On Jun 19, 2019, at 20:49, Shrabani Ghosh <srbn.ghosh99@gmail.com> wrote: External Email - Use Caution Hi freesurfer, I am following the installation test as suggested (https://surfer.nmr.mgh.harvard.edu/fswiki/DownloadAndInstall and am currently stuck at example 2. When I ran recon-all, I got the output: "bash: /home/sghos003/freesurfer/bin/recon-all: /bin/tcsh: bad interpreter: No such file or directory"Any suggestions? Thank you..
Shrabani Ghosh_______________________________________________Freesurfer mailing listFreesurfer@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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Thank You. It's working now. But I can see the execution time is really slow. Is it possible to make it faster using CUDA or any other way?
On Thu, Jun 20, 2019 at 1:29 AM fsbuild fsbuild@contbay.com wrote:
Hello Shrabani,
It looks like you do not have tcsh installed on your machine to run recon-all which is a tcsh script,
If you are using RedHat/CentOS linux,
$ sudo yum install tcsh
Fedora linux
$ sudo dnf install tcsh
Ubuntu/debian linux,
$ sudo apt-get install tcsh
I would also probably install csh the same way as well.
- R.
On Jun 19, 2019, at 20:49, Shrabani Ghosh srbn.ghosh99@gmail.com wrote:
External Email - Use CautionHi freesurfer,
I am following the installation test as suggested (
https://surfer.nmr.mgh.harvard.edu/fswiki/DownloadAndInstall and am currently stuck at example 2. When I ran recon-all, I got the output:
"bash: /home/sghos003/freesurfer/bin/recon-all: /bin/tcsh: bad interpreter:
No such file or directory"
Any suggestions? Thank you.
Shrabani Ghosh
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
if you have multiple cores you can use -openmp <N> which gives a pretty good speed increase up to about N=4 or 5
cheers Bruce On Thu, 20 Jun 2019, Shrabani Ghosh wrote:
External Email - Use Caution
Thank You. It's working now. But I can see the execution time is really slow. Is it possible to make it faster using CUDA or any other way?
On Thu, Jun 20, 2019 at 1:29 AM fsbuild fsbuild@contbay.com wrote: Hello Shrabani, It looks like you do not have tcsh installed on your machine to run recon-all which is a tcsh script,
If you are using RedHat/CentOS linux,
$ sudo yum install tcsh
Fedora linux
$ sudo dnf install tcsh
Ubuntu/debian linux,
$ sudo apt-get install tcsh
I would also probably install csh the same way as well.
R.
On Jun 19, 2019, at 20:49, Shrabani Ghosh <srbn.ghosh99@gmail.com> wrote:External Email - Use Caution
Hi freesurfer, I am following the installation test as suggested (
https://surfer.nmr.mgh.harvard.edu/fswiki/DownloadAndInstall and am currently stuck at example 2. When I ran recon-all, I got the output:
"bash: /home/sghos003/freesurfer/bin/recon-all: /bin/tcsh: bad interpreter:
No such file or directory"
Any suggestions? Thank you.
Shrabani Ghosh
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu