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Dear FS, I would like to ask if freesurfer can run multi-threaded. If so, can you give us some guidance on this?
Thanks in advance yours yujunjie
Yes, use the -openmp option in recon-all
Cheers Bruce
On Nov 16, 2018, at 9:52 PM, 1013364183 yujunjie828@qq.com wrote:
External Email - Use CautionDear FS, I would like to ask if freesurfer can run multi-threaded. If so, can you give us some guidance on this?
Thanks in advance yours yujunjie _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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Dear Bruce, Thank you very much for your reply. I have not been able to find -openmp option.How should we set this parameter? Can you give me a link?
yours yujunjie
------------------ 原始邮件 ------------------ 发件人: "Bruce Fischl"fischl@nmr.mgh.harvard.edu; 发送时间: 2018年11月17日(星期六) 中午11:03 收件人: "Freesurfer support list"freesurfer@nmr.mgh.harvard.edu;
主题: Re: [Freesurfer] multi-threaded question
Yes, use the -openmp option in recon-all
Cheers Bruce
On Nov 16, 2018, at 9:52 PM, 1013364183 yujunjie828@qq.com wrote:
External Email - Use Caution
Dear FS, I would like to ask if freesurfer can run multi-threaded. If so, can you give us some guidance on this?
Thanks in advance yours yujunjie
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
yes, it seems not to be in the help, which we will fix. YOu run recon-all as normal, but if you want to use more than one core you include:
recon-all -openmp <# of cores to use> ...
cheers Bruce
On Sat, 17 Nov 2018, 1013364183 wrote:
External Email - Use Caution
Dear Bruce, Thank you very much for your reply. I have not been able to find -openmp option.How should we set this parameter? Can you give me a link?
yours yujunjie
------------------ ???????? ------------------ ??????: "Bruce Fischl"fischl@nmr.mgh.harvard.edu; ????????: 2018??11??17??(??????) ????11:03 ??????: "Freesurfer support list"freesurfer@nmr.mgh.harvard.edu; ????: Re: [Freesurfer] multi-threaded question
Yes, use the -openmp option in recon-all
Cheers Bruce
On Nov 16, 2018, at 9:52 PM, 1013364183 yujunjie828@qq.com wrote:
External Email - Use Caution Dear FS,I would like to ask if freesurfer can run multi-threaded. If so, can you give us some guidance on this? Thanks in advance yours yujunjie
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu