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Dear FS, I ran the recon-all command and it failed to fix it for many days when I fixed the defect. I have modified the threshold of the split algorithm. I want to know if there are other ways to fix the Its log file is in the attachment.
Thank you in advance
yours yujunjie
Hi yujunjie
the last entry in the log file is:
CORRECTING DEFECT 5 (vertices=53772, convex hull=1434, v0=15308) XL defect detected...
this is a giant defect - about 1/4 of your total surface. It means that something major went wrong - skull attached, or hemis connected or something. You should look at the rh.orig.nofix and the rh.inflated.nofix surfaces to see what it is.
cheers Bruce
On Sat, 17 Nov 2018, 1013364183 wrote:
External Email - Use Caution
Dear FS, I ran the recon-all command and it failed to fix it for many days when I fixed the defect. I have modified the threshold of the split algorithm. I want to know if there are other ways to fix the Its log file is in the attachment.
Thank you in advance
yours yujunjie
freesurfer@nmr.mgh.harvard.edu