yes, you can use the binary mris_thickness to compute the thickness

cheers Bruce On Wed, 1 Aug 2018, Nillo, Ryan Michael R wrote:

External Email - Use Caution

Hello FreeSurfer experts,

I want to use FreeSurfer to generate thickness files using my own surfaces. Is there a way to use white and pial surfaces not generated from the mris_make_surfaces to create thickness files?

Mahalo,

Ryan M Nillo

Staff Research Associate I

UCSF Department of Radiology and Biomedical Imaging