The only way to do what you want is to combine the labels into an annotation file (mris_label2annot), then run mris_anatomical_stats on the annot, then you can run aparcstats2table on the output of that. This may or may not be easier than doing what you are already doing. doug.

On 11/10/13 3:58 PM, Chung, Yoonho wrote:

Dear fs experts,

I have created 5 customized labels that I want to extract mean thickness from each subject. Is there a way to generate a text file for all the labels I made? For example, aparcstats2table --parc option only allows to read one label at a time. I am wondering if there is a way for this function to take all 5 labels I created so that I will have all the measures in one text file. Right now I have to do them independently for each label and manually combine them together into one text file.

Thanks! Yoon

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