Hi Antonella, Just run recon-all with the flag "-hippo-subfields" but without the flag "-all" (otherwise you'll be rerunning a lot of stuff you do not need to rerun): DO: recon-all -s bert -hippo-subfields DON'T DO: recon-all -s bert -all -hippo-subfields Kind regards, /Eugenio

On Mon, 2012-12-03 at 08:39 -0800, Antonella Kis wrote:

Dear FS team,

I would like to know if there is any options to get the hippocampal subfield segmentation so I can get the volume for each segmentation if I

was running only recon-all for all my subjects or I need to re-run recon-all but with a hippocampal subfield segmentation option this time?

Many thanks, Antonella _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer