Hi,
I am currently in the process of reconstructing my brains after edits. However, the brains keep being reconstructed with large portions of brain missing/cerebellum missing; ie they are much worse than before I edited them. However, I am sure that I have only put control points in white matter areas; ie not partial volume, so I am very confused as to why this is happening; in one brain for example I had not put any cotnrol points (only made a very small white matter edit). Has this happened to anyone else before? Am i somehow running the wrong command somewhere? Could the watershed be wrong in the script, ie accidentally changed?
Grateful for help,
Regards Cathy
Hi Cathy What version are you running? If 5.1 you will need Nick's updated recon-all Cheers Bruce
On Dec 3, 2012, at 5:33 AM, Catherine Bois clb542@york.ac.uk wrote:
Hi,
I am currently in the process of reconstructing my brains after edits. However, the brains keep being reconstructed with large portions of brain missing/cerebellum missing; ie they are much worse than before I edited them. However, I am sure that I have only put control points in white matter areas; ie not partial volume, so I am very confused as to why this is happening; in one brain for example I had not put any cotnrol points (only made a very small white matter edit). Has this happened to anyone else before? Am i somehow running the wrong command somewhere? Could the watershed be wrong in the script, ie accidentally changed?
Grateful for help,
Regards Cathy _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
-
Bruce Fischl -
Catherine Bois