Ciao, Daniele, the alveus segmentation was very thin and unreliable, so we left it our of the results (even though it is still used in the model, and influences the fit of the atlas to the MRI scan). Cheers, Eugenio

Juan Eugenio Iglesias Postdoctoral researcher BCBL www.jeiglesias.com www.bcbl.eu

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From: "Daniele Orlandi" daniele.orlandi.psy@gmail.com To: "Freesurfer support list" Freesurfer@nmr.mgh.harvard.edu Sent: Tuesday, November 3, 2015 12:36:30 PM Subject: [Freesurfer] subfields segmentation FS v6.0

Dear all I'm running the new pipleline for hippocampal subfields segmentation with FreeSurfer v6.0 on a T13D image. As results i can extract values for the Whole hippocampus and the following subfields: Hippocampal_tail, subiculum, CA1, hippocampal-fissure, presubiculum, parasubiculum, molecular_layer_HP, GC-ML-DG, CA3, CA4, fimbria, HATA but not for Alveus as reported in the paper of Iglesias, JE. et al. 2015. Was my computation wrong?

Best, Daniele

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