To Whom It May Concern:
I am conducting FreeSurfer analysis for a multi-site project and I'm unable to run recon-all on the T1 data for all but one of the sites. The problem I'm dealing with is identical for all of the subjects for which recon-all crashes. I do not want to speculate as to why recon-all works for one of the sites but it's worth mentioning that that site has a slightly different T1 protocol and that these images were uploaded via a physical backup disk while for the other sites, I downloaded the T1 data for the other sites from a database shared by all of the project investigators. I would like to upload the images for one the T1-weighted sequences that crashes recon-all. If somebody could let me know how to go about that, I would really appreciate it. Thank you.
Here is the requested information for anyone reporting a bug:
FREESURFER_HOME: /Applications/freesurfer
Build stamp: freesurfer-Darwin-lion-stable-pub-v5.3.0
Kernel info: Darwin 15.0.0 x86_64
Subject Name: 14-140-0052
Command Line Executed: recon-all -all -i /users/brianbiekman/Desktop/Brain_Scope/14-140-0052/00001.dcm -s 14-140-0052
Error message generated: Screenshot of error message attached
recon-all log: Attached
________________________________ From: Biekman, Brian Darnell Sent: Wednesday, October 21, 2015 10:29 AM To: freesurfer@nmr.mgh.harvard.edu Subject: recon-all crashing
To Whom It May Concern:
I am conducting FreeSurfer analysis for a multi-site project and I'm unable to run recon-all on the T1 data for all but one of the sites. The problem I'm dealing with is identical for all of the subjects for which recon-all crashes. I do not want to speculate as to why recon-all works for one of the sites but it's worth mentioning that that site has a slightly different T1 protocol and that these images were uploaded via a physical backup disk while for the other sites, I downloaded the T1 data for the other sites from a database shared by all of the project investigators. I would like to upload the images for one the T1-weighted sequences that crashes recon-all. If somebody could let me know how to go about that, I would really appreciate it. Thank you.
Here is the requested information for anyone reporting a bug:
FREESURFER_HOME: /Applications/freesurfer
Build stamp: freesurfer-Darwin-lion-stable-pub-v5.3.0
Kernel info: Darwin 15.0.0 x86_64
Subject Name: 14-140-0052
Command Line Executed: recon-all -all -i /users/brianbiekman/Desktop/Brain_Scope/14-140-0052/00001.dcm -s 14-140-0052
Error message generated: Screenshot of error message attached
recon-all log: Attached
Can you try this version? ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_convert.mac
If that fails, can you send me your dicoms through our filedrop?
https://gate.nmr.mgh.harvard.edu/filedrop2
doug
On 11/02/2015 11:14 AM, Biekman, Brian Darnell wrote:
*From:* Biekman, Brian Darnell *Sent:* Wednesday, October 21, 2015 10:29 AM *To:* freesurfer@nmr.mgh.harvard.edu *Subject:* recon-all crashing To Whom It May Concern:
I am conducting FreeSurfer analysis for a multi-site project andI'm unable to run recon-all on the T1 data for all but one of the sites. The problem I'm dealing with is identical for all of the subjects for which recon-all crashes. I do not want to speculate as to why recon-all works for one of the sites but it's worth mentioning that that site has a slightly different T1 protocol and that these images were uploaded via a physical backup disk while for the other sites, I downloaded the T1 data for the other sites from a database shared by all of the project investigators. I would like to upload the images for one the T1-weighted sequences that crashes recon-all. If somebody could let me know how to go about that, I would really appreciate it. Thank you.
Here is the requested information for anyone reporting a bug:
FREESURFER_HOME: /Applications/freesurfer
Build stamp: freesurfer-Darwin-lion-stable-pub-v5.3.0
Kernel info: Darwin 15.0.0 x86_64
Subject Name: 14-140-0052
Command Line Executed: recon-all -all -i /users/brianbiekman/Desktop/Brain_Scope/14-140-0052/00001.dcm -s 14-140-0052
Error message generated: Screenshot of error message attached
recon-all log: Attached
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freesurfer@nmr.mgh.harvard.edu
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Biekman, Brian Darnell -
Douglas N Greve