--fsl flag in bbregister

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Nasim Maleki

8 Mar 2010 8 Mar '10

10:46 a.m.

Hello Doug,

I get an error message when using --fsl flag with bbregister:

"ERROR: Flag --fsl unrecognized."

I'm using:

bbregister,v 1.14.2.12 2009/08/07 22:21:00 greve

Is this version of the bbregister that I'm using the latest?

Thank you, Nasim

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Douglas N Greve

8 Mar 8 Mar

10:57 a.m.

What are you trying to do? If you want to init with fsl then use --init-fsl. In newer versions you can have it output a flirt matrix with --fsl.

doug

Nasim Maleki wrote:

...

Hello Doug,

I get an error message when using --fsl flag with bbregister:

"ERROR: Flag --fsl unrecognized."

I'm using:

bbregister,v 1.14.2.12 2009/08/07 22:21:00 greve

Is this version of the bbregister that I'm using the latest?

Thank you, Nasim

Matt Glasser

11 Dec 11 Dec

6:51 p.m.

Hi Doug,

It appears in FreeSurfer 5.0 the flag the bbregister script is looking for is --fslmat but in the docs it says it is --fsl.

Peace,

Matt.

-----Original Message----- From: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf Of Douglas N Greve Sent: Monday, March 08, 2010 9:57 AM To: Nasim Maleki Cc: Freesurfer Subject: Re: [Freesurfer] --fsl flag in bbregister

What are you trying to do? If you want to init with fsl then use --init-fsl. In newer versions you can have it output a flirt matrix with --fsl.

doug

Nasim Maleki wrote:

...

Hello Doug,

I get an error message when using --fsl flag with bbregister:

"ERROR: Flag --fsl unrecognized."

I'm using:

bbregister,v 1.14.2.12 2009/08/07 22:21:00 greve

Is this version of the bbregister that I'm using the latest?

Thank you, Nasim

-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.

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Douglas N Greve
Matt Glasser
Nasim Maleki