Hi Doug,
It appears in FreeSurfer 5.0 the flag the bbregister script is looking for is --fslmat but in the docs it says it is --fsl.
Peace,
Matt.
-----Original Message----- From: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf Of Douglas N Greve Sent: Monday, March 08, 2010 9:57 AM To: Nasim Maleki Cc: Freesurfer Subject: Re: [Freesurfer] --fsl flag in bbregister
What are you trying to do? If you want to init with fsl then use --init-fsl. In newer versions you can have it output a flirt matrix with --fsl.
doug
Nasim Maleki wrote:
Hello Doug,
I get an error message when using --fsl flag with bbregister:
"ERROR: Flag --fsl unrecognized."
I'm using:
bbregister,v 1.14.2.12 2009/08/07 22:21:00 greve
Is this version of the bbregister that I'm using the latest?
Thank you, Nasim