yes On Fri, 20 May 2011, Ritobrato Datta wrote:

Continuing the conversation, if I have a flattened patch like an occipital patch, and i manually draw a label on it and save it, can I then use mri_label2label to map it to other subjects ?

Thx

Ri

----- Original Message ----- From: "Bruce Fischl" fischl@nmr.mgh.harvard.edu To: "Gabriel Go.Es." gabriellbk@hotmail.com Cc: "free surfer" freesurfer@nmr.mgh.harvard.edu Sent: Friday, May 20, 2011 8:26:40 AM Subject: Re: [Freesurfer] flattenning question

Hi Gabriel

you cut the patch out in tksurfer first, then call mris_flatten. For small patches such as occipital ones we typically use the -complete option these days which minimizes the complete distance distortion matrix.

cheers Bruce

On Fri, 20 May 2011, Gabriel Go.Es. wrote:

...

Dear FreeSurfers

I'm wondering about the flattenning options of FS I've saw that the "mris-flatten" command does the trick but, it asks for a patch, my questions are: can I flat any cortical region? and, how do I create a patch to mris_flatten?

Thanks in advanced, Gabriel

---

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sure. Just load a surface in tksurfer, then use file->load patch to load the flattened patch On Fri, 20 May 2011, Gabriel Go.Es. wrote:

Thank you bruce, Now I'm trying to flatten a part of the surface, now i'm wondering if it is possible to set an overlay to the flatten surface just as in the inflated by loading it on tksurfer.

Bests, Gabriel

...

Date: Fri, 20 May 2011 08:26:40 -0400 From: fischl@nmr.mgh.harvard.edu To: gabriellbk@hotmail.com CC: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] flattenning question

Hi Gabriel

you cut the patch out in tksurfer first, then call mris_flatten. For small patches such as occipital ones we typically use the -complete option these days which minimizes the complete distance distortion matrix.

cheers Bruce

On Fri, 20 May 2011, Gabriel Go.Es. wrote:

...

Dear FreeSurfers

I'm wondering about the flattenning options of FS I've saw that the "mris-flatten" command does the trick but, it asks for a patch, my questions are: can I flat any cortical region? and, how do I create a patch to mris_flatten?

Thanks in advanced, Gabriel

The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.