External Email - Use Caution
Hello,
We thought we had finished manually editing a T1 scan and so opened it in the external 3D view to perform final checks and it looks incredibly messy (see attached screenshot). Are you able to advise whether this is an issue? If so, is it possible to fix it and, if it can be fixed, how we should go about doing so? Also, do you have any idea what might have caused this to happen?
Thank you in advance!
Harriet Cornwell
Hi Harriet
Is that a parcellation overlaid on the brain? Usually this means something was not regenerated when you reran (like the parcellation). Try just recreating it an see if it fixes your problems. Should just take a couple of min to run just the parcellation stage
Cheers Bruce
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Harriet Cornwell Sent: Friday, June 18, 2021 9:54 AM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] External 3D View Issue
External Email - Use Caution
External Email - Use Caution Hello,
We thought we had finished manually editing a T1 scan and so opened it in the external 3D view to perform final checks and it looks incredibly messy (see attached screenshot). Are you able to advise whether this is an issue? If so, is it possible to fix it and, if it can be fixed, how we should go about doing so? Also, do you have any idea what might have caused this to happen?
Thank you in advance!
Harriet Cornwell
freesurfer@nmr.mgh.harvard.edu
-
Fischl, Bruce -
Harriet Cornwell