Thanks for your help on this! It was a corruption problem, just as you said- didn't seem to be a disk space problem, but I deleted the file, re-ran, and things went fine.
Cheers
Ben
_______________________ Ben Smith, MSc. Ph.D. Candidate University of Southern California https://bjsmith.github.io/ w | +1 213-740 7851 m | +1 323-385 9349 skype | ben.smith.nz
On Mon, Feb 19, 2018 at 9:11 AM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Ben
we find the CC as the region where there is the largest left/right WM connection. We then orient it to be vertical and find principle directions, and divvy it up into however many segments you want (I think the default is 5 but this can be changed). We then grow it out laterally as far as your specify
cheers Bruce
On Mon, 19 Feb 2018, Benjamin Yeske wrote:
Hello Freesurfer Experts, I was looking through your website to see if I could find any
info/papers that explained what
landmarks you use for segmenting the corpus callosum, but I couldn't
find anything on the topic.
Could you please point me to a paper or resource that explains how
freesurfer captures the corpus
callosum and what landmarks it use to segment it out? We'd like to be
able to hand check this region
for accuracy in our TBI patients brain scans.
Thank you, Ben
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Ben Smith