Thanks Doug,

The command line I am running is: mri_cor2label --c /cluster/ablood/1/${experimental_directory}/${recons_directory}/${identifier}_recon/mri/aseg.mgz --id 1029 --l /cluster/ablood/1/${experimental_directory}/${recons_directory}/${identifier}_recon/label/suppar_ctx_LH_${identifier}.label

This yields the following error: ERROR: id=1029, must be 0<id<255

In this same script I ran ID numbers for regions <255 on the same subjects, and the labels were created correctly.

Is there something about my command line structure that's limiting my options?

Thanks! Jeff

Hi Jeff, are you sure that mri_cor2label does not take ids > 255? I just ran it without a problem. doug

On 05/03/2013 11:30 AM, jwaugh@nmr.mgh.harvard.edu wrote:

...

Hello Freesurfers, I would like to use mri_cor2label for areas of the cortext defined in the FreeSurferColorLUT.txt. There are many ROIs whose IDs are >255, the numerical limit imposed on mri_cor2label. How can I define labels using these larger-numbered ROIs? I am specifically interested in using LUT IDs such as 1024 and 2024, the L and R precentral gyrus segmentation.

Thank you!

Jeff

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yea, the aseg only goes to 255.

On 5/3/13 10:44 PM, Bruce Fischl wrote:

Hi Jeff Don't you want the aparc+aseg not the aseg? Bruce

On May 3, 2013, at 10:37 PM, jwaugh@nmr.mgh.harvard.edu wrote:

...

Thanks Doug,

The command line I am running is: mri_cor2label --c /cluster/ablood/1/${experimental_directory}/${recons_directory}/${identifier}_recon/mri/aseg.mgz --id 1029 --l /cluster/ablood/1/${experimental_directory}/${recons_directory}/${identifier}_recon/label/suppar_ctx_LH_${identifier}.label

This yields the following error: ERROR: id=1029, must be 0<id<255

In this same script I ran ID numbers for regions <255 on the same subjects, and the labels were created correctly.

Is there something about my command line structure that's limiting my options?

Thanks! Jeff

...

Hi Jeff, are you sure that mri_cor2label does not take ids > 255? I just ran it without a problem. doug

On 05/03/2013 11:30 AM, jwaugh@nmr.mgh.harvard.edu wrote:

...

Hello Freesurfers, I would like to use mri_cor2label for areas of the cortext defined in the FreeSurferColorLUT.txt. There are many ROIs whose IDs are >255, the numerical limit imposed on mri_cor2label. How can I define labels using these larger-numbered ROIs? I am specifically interested in using LUT IDs such as 1024 and 2024, the L and R precentral gyrus segmentation.

Thank you!

Jeff

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Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/

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