yea, the aseg only goes to 255.
On 5/3/13 10:44 PM, Bruce Fischl wrote:
Hi Jeff Don't you want the aparc+aseg not the aseg? Bruce
On May 3, 2013, at 10:37 PM, jwaugh@nmr.mgh.harvard.edu wrote:
Thanks Doug,
The command line I am running is: mri_cor2label --c /cluster/ablood/1/${experimental_directory}/${recons_directory}/${identifier}_recon/mri/aseg.mgz --id 1029 --l /cluster/ablood/1/${experimental_directory}/${recons_directory}/${identifier}_recon/label/suppar_ctx_LH_${identifier}.label
This yields the following error: ERROR: id=1029, must be 0<id<255
In this same script I ran ID numbers for regions <255 on the same subjects, and the labels were created correctly.
Is there something about my command line structure that's limiting my options?
Thanks! Jeff
Hi Jeff, are you sure that mri_cor2label does not take ids > 255? I just ran it without a problem. doug
On 05/03/2013 11:30 AM, jwaugh@nmr.mgh.harvard.edu wrote:
Hello Freesurfers, I would like to use mri_cor2label for areas of the cortext defined in the FreeSurferColorLUT.txt. There are many ROIs whose IDs are >255, the numerical limit imposed on mri_cor2label. How can I define labels using these larger-numbered ROIs? I am specifically interested in using LUT IDs such as 1024 and 2024, the L and R precentral gyrus segmentation.
Thank you!
Jeff
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