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Dear all,
We conducted the recon-all and applied a quality control protocol in several subjects using the FSurfer 6 version. Now, we would like to run the recon-all again on an older version of FSurfer (5.3 v) but considering the edits we made on those previous recon-all. Is this possible?, and if so, what would be the command?
Thank you very much in advance.
Best regards,
Steve.
If you are going from 5.3 to 6, you should just be able to run recon-all -all on the 5.3 folder and it should take into account your previous edits (make a copy first though:)
On 11/12/2021 4:40 AM, Steve Petersen wrote:
External Email - Use Caution
Dear all,
We conducted the recon-all and applied a quality control protocol in several subjects using the FSurfer 6 version. Now, we would like to run the recon-all again on an older version of FSurfer (5.3 v) but considering the edits we made on those previous recon-all. Is this possible?, and if so, what would be the command?
Thank you very much in advance.
Best regards,
Steve.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
External Email - Use Caution
Hi Douglas,
I would going from freesurfer 6 to freesurfer 5.3, not from FS 5.3 to FS 6.
Best,
El vie., 12 nov. 2021 15:51, Douglas N. Greve dgreve@mgh.harvard.edu escribió:
If you are going from 5.3 to 6, you should just be able to run recon-all -all on the 5.3 folder and it should take into account your previous edits (make a copy first though:)
On 11/12/2021 4:40 AM, Steve Petersen wrote:
External Email - Use CautionDear all,
We conducted the recon-all and applied a quality control protocol in several subjects using the FSurfer 6 version. Now, we would like to run the recon-all again on an older version of FSurfer (5.3 v) but considering the edits we made on those previous recon-all. Is this possible?, and if so, what would be the command?
Thank you very much in advance.
Best regards,
Steve.
Freesurfer mailing listFreesurfer@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/1WPi6-EmssmI2iLG15xmYyxeYhSGoyNTDf4oPy_Qx9k1Tb0... The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at http://secure-web.cisco.com/1fWn93lUWOA0uXuAi-LRAomJY4zMi6OfnzcFLbgFB0QFT47e... . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.
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I am in the same situation as Steve. Is there a particular flag to rerun subjects in freesurfer 5.3.
Best regards,
El vie., 12 nov. 2021 16:45, Miguel Ángel Rivas Fernández < miguelrivasfdez@gmail.com> escribió:
Hi Douglas,
I would going from freesurfer 6 to freesurfer 5.3, not from FS 5.3 to FS 6.
Best,
El vie., 12 nov. 2021 15:51, Douglas N. Greve dgreve@mgh.harvard.edu escribió:
If you are going from 5.3 to 6, you should just be able to run recon-all -all on the 5.3 folder and it should take into account your previous edits (make a copy first though:)
On 11/12/2021 4:40 AM, Steve Petersen wrote:
External Email - Use CautionDear all,
We conducted the recon-all and applied a quality control protocol in several subjects using the FSurfer 6 version. Now, we would like to run the recon-all again on an older version of FSurfer (5.3 v) but considering the edits we made on those previous recon-all. Is this possible?, and if so, what would be the command?
Thank you very much in advance.
Best regards,
Steve.
Freesurfer mailing listFreesurfer@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/1ohY0i3u1vzc0x-JNwyqvnfBmvTJAz78Y59irTbOA2wXO9n... The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at http://secure-web.cisco.com/16TiIUV9VuvtDhCs_xopalyDIqaLe38n-FwaO0VBHRPGv7X5... . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.
Oh, I think that should work, but no promises. Just re-run the v6 output in 5.3. Why are you going back to 5.3?
On 11/12/2021 10:45 AM, Miguel Ángel Rivas Fernández wrote:
External Email - Use Caution
Hi Douglas,
I would going from freesurfer 6 to freesurfer 5.3, not from FS 5.3 to FS 6.
Best,
El vie., 12 nov. 2021 15:51, Douglas N. Greve dgreve@mgh.harvard.edu escribió:
If you are going from 5.3 to 6, you should just be able to run recon-all -all on the 5.3 folder and it should take into account your previous edits (make a copy first though:) On 11/12/2021 4:40 AM, Steve Petersen wrote:External Email - Use Caution Dear all, We conducted the recon-all and applied a quality control protocol in several subjects using the FSurfer 6 version. Now, we would like to run the recon-all again on an older version of FSurfer (5.3 v) but considering the edits we made on those previous recon-all. Is this possible?, and if so, what would be the command? Thank you very much in advance. Best regards, Steve. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer <https://secure-web.cisco.com/1WPi6-EmssmI2iLG15xmYyxeYhSGoyNTDf4oPy_Qx9k1Tb0M9RQOv9WTJrUWgbNihGlui9uC-4BcxOAeFvHudYChKBzDDk6iFKNx5wnJlKr_89Uhd-gNki8YrcLYSNVq3CCcnEd07QpvU6lmcNSLDzV5jpjVS4GF3jUSGD8GebkagTIo57EROT7f57zVro5gguXVhd7JpIaOGhWe8VvBzuznrDTuJC-0ppt05Hss9i9nUmvYCpMkAYCUK3eCC8dSxgynAnJtNbZQpYHFOHPtp_T47zyCkMVqIbXGKgaQxp490B78f8MrKvK8nZ95Py3SX1VDkg_G-VngdrqZAszKO1w/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer>_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer <https://secure-web.cisco.com/1WPi6-EmssmI2iLG15xmYyxeYhSGoyNTDf4oPy_Qx9k1Tb0M9RQOv9WTJrUWgbNihGlui9uC-4BcxOAeFvHudYChKBzDDk6iFKNx5wnJlKr_89Uhd-gNki8YrcLYSNVq3CCcnEd07QpvU6lmcNSLDzV5jpjVS4GF3jUSGD8GebkagTIo57EROT7f57zVro5gguXVhd7JpIaOGhWe8VvBzuznrDTuJC-0ppt05Hss9i9nUmvYCpMkAYCUK3eCC8dSxgynAnJtNbZQpYHFOHPtp_T47zyCkMVqIbXGKgaQxp490B78f8MrKvK8nZ95Py3SX1VDkg_G-VngdrqZAszKO1w/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer> The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* http://www.massgeneralbrigham.org/complianceline <http://secure-web.cisco.com/1fWn93lUWOA0uXuAi-LRAomJY4zMi6OfnzcFLbgFB0QFT47eHzSexc9UXZ_15h46iUmWrdrzLAP2gzS0i4sctofRUz9eg-d15Ox7O3gkuKRxTDP7TCBpoOgprdldE79lf2pdKeFvX1SR6GNVzpZOFm955tpEd3G1Z_Oa4mxpgp34KW0BjUoBI3xucqS836DUoQyeHpfLSMrkRhc5CJbvhO6xhFn2I3AEt6IrnyyA4nmorMTEjPHVEDeNPc8ZYR1C3N4U17jDlKOQohEmmQWdoR_ZeGThjIQU4QQQ7OZOzK-rnB5uDqB44sLchFUoXQjLub8I-GqmYEUZhP-h3-TqY6Q/http%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline> . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.
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