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Hello Freesurfer team, I did a white matter atlas from surface annot with mri_aparc2aseg. However, when I use this atlas in comparison with the original T1 I have observed that both images don't share the transformation matrix. Do you know how I could I fix this issue?
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What do you mean when you say "with the original T1"? The file mri/T1.mgz? Or non-conformed files (like the raw DICOMs, raw NIFTI, or mri/orig/001.mgz)?
Best,
Tim
-- Dr. Tim Schäfer Postdoc Computational Neuroimaging Department of Child and Adolescent Psychiatry, Psychosomatics and Psychotherapy University Hospital Frankfurt, Goethe University Frankfurt am Main, Germany
On 11/12/2021 12:23 PM Alberto Del Cerro Leon bertocerron@gmail.com wrote:
External Email - Use Caution
Hello Freesurfer team, I did a white matter atlas from surface annot with mri_aparc2aseg. However, when I use this atlas in comparison with the original T1 I have observed that both images don't share the transformation matrix. Do you know how I could I fix this issue? _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/195EwcIO_ZL3iPE92ltdkl8Yu0XaXnGBDLLKz2Z45jVqVcl...
Have you seen this page? https://surfer.nmr.mgh.harvard.edu/fswiki/FsAnat-to-NativeAnat
On 11/12/2021 6:23 AM, Alberto Del Cerro Leon wrote:
External Email - Use Caution
Hello Freesurfer team, I did a white matter atlas from surface annot with mri_aparc2aseg. However, when I use this atlas in comparison with the original T1 I have observed that both images don't share the transformation matrix. Do you know how I could I fix this issue?
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
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Alberto Del Cerro Leon -
Douglas N. Greve -
Tim Schäfer