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We are running some hi-res 0.8mm3 isotropic data through FS 7.2 using the following command. recon-all -s subj -all -hires
We are adding back brain which has been removed by the masking process by cloning the T1/brainmask images in freeview and adding back voxels. A revised brainmask.mgz is saved.
Can/should the same command be used to rerun using hi-res data?
Jim
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External Email - Use Caution
Can someone confirm?
Thx. Jim
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Alexopoulos, Dimitrios Sent: Tuesday, April 12, 2022 3:24 PM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] rerunning on 7.2 with edited brainmask using hi-res
* External Email - Caution *
External Email - Use Caution We are running some hi-res 0.8mm3 isotropic data through FS 7.2 using the following command. recon-all -s subj -all -hires
We are adding back brain which has been removed by the masking process by cloning the T1/brainmask images in freeview and adding back voxels. A revised brainmask.mgz is saved.
Can/should the same command be used to rerun using hi-res data?
Jim
________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail.
________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail.
Yes, same command
On 4/17/2022 10:24 PM, Alexopoulos, Dimitrios wrote:
External Email - Use Caution
Can someone confirm?
Thx.
Jim
*From:* freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu *On Behalf Of *Alexopoulos, Dimitrios *Sent:* Tuesday, April 12, 2022 3:24 PM *To:* Freesurfer support list freesurfer@nmr.mgh.harvard.edu *Subject:* [Freesurfer] rerunning on 7.2 with edited brainmask using hi-res
** External Email - Caution **
* External Email - Use Caution *
We are running some hi-res 0.8mm3 isotropic data through FS 7.2 using the following command.
*recon-all -s subj -all –hires*
**
We are adding back brain which has been removed by the masking process by cloning the T1/brainmask images in freeview and adding back voxels.
A revised brainmask.mgz is saved.
Can/should the same command be used to rerun using hi-res data?
Jim
**
The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail.
The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail.
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Alexopoulos, Dimitrios -
Douglas N. Greve