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Dear Eugenio,

there is one error in the error.log: 'Could not set locale'.

Best regards

Marcel

On Thu, Oct 4, 2018 at 6:01 PM freesurfer-request@nmr.mgh.harvard.edu wrote:

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Today's Topics:

1. Re: output values of vertices on surface into a textfile (Greve, Douglas N.,Ph.D.)
2. hippocampal subfields error (Marcel Heers)
3. Re: hippocampal subfields error (Iglesias Gonzalez, Eugenio)
4. Mac OS free surfer instalation (Vasile, Eduard) (Vasile, Eduard)
5. Re: Mac OS free surfer instalation (Vasile, Eduard) (Dicamillo, Robert)
6. mri_surf2surf --mapmethod nnf not working? (Viessmann, Olivia M.)
7. create label from cluster obtained with mri_glm-fit-sim (Ting Li)
8. Re: create label from cluster obtained with mri_glm-fit-sim (Ting Li)
9. Re: create label from cluster obtained with mri_glm-fit-sim (Ting Li)
10. Re: mri_surf2surf --mapmethod nnf not working? (Greve, Douglas N.,Ph.D.)
11. Problem with new tool on thalamus segmentation (stdp82@virgilio.it)
12. Re: mri_surf2surf --mapmethod nnf not working? (Viessmann, Olivia M.)

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Message: 1 Date: Wed, 3 Oct 2018 17:09:32 +0000 From: "Greve, Douglas N.,Ph.D." DGREVE@mgh.harvard.edu Subject: Re: [Freesurfer] output values of vertices on surface into a textfile To: "freesurfer@nmr.mgh.harvard.edu" freesurfer@nmr.mgh.harvard.edu Message-ID: e6681419-a7f2-cf18-fd5b-3f5455ce8236@mgh.harvard.edu Content-Type: text/plain; charset="utf-8"

mris_convert lh.white lh.white.asc will convert it to ascii. This file will have both xyz coordinates and neighborhood relationships, so you'll have to delete the latter. You can also load the surface into matlab with read_surf.m

On 10/03/2018 11:48 AM, Sims, Sara A wrote:

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Hello!

I would like to output the location and value of each vertex on a surface to a text file. How could I go about doing this?

Thanks,

Sara Sims

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Message: 2 Date: Wed, 3 Oct 2018 21:09:55 +0200 From: Marcel Heers marcel.heers@gmail.com Subject: [Freesurfer] hippocampal subfields error To: freesurfer@nmr.mgh.harvard.edu Message-ID: < CAMq9WnM7pRzZmGYA6PhxKa8GHPgrZraA_4sBspBOzOc9qjV5fQ@mail.gmail.com> Content-Type: text/plain; charset="utf-8"

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Dear Eugenio,

I am currently testing the newest version of your hippocampal subfield analysis script. If I process the data on my macbook the files hipposubfields.lh.T2.v21.file_ID contain the volumes of the different nuclei, but on the linux server these files remain empty. On the server I installed freesurfer as local user. Do you have any suggestions how to check what might go wrong?

Thanks for your help!

Marcel