External Email - Use Caution
Dear Eugenio,
there is one error in the error.log: 'Could not set locale'.
Best regards
Marcel
On Thu, Oct 4, 2018 at 6:01 PM freesurfer-request@nmr.mgh.harvard.edu wrote:
Send Freesurfer mailing list submissions to freesurfer@nmr.mgh.harvard.edu
To subscribe or unsubscribe via the World Wide Web, visit https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer or, via email, send a message with subject or body 'help' to freesurfer-request@nmr.mgh.harvard.edu
You can reach the person managing the list at freesurfer-owner@nmr.mgh.harvard.edu
When replying, please edit your Subject line so it is more specific than "Re: Contents of Freesurfer digest..."
Today's Topics:
- Re: output values of vertices on surface into a textfile (Greve, Douglas N.,Ph.D.)
- hippocampal subfields error (Marcel Heers)
- Re: hippocampal subfields error (Iglesias Gonzalez, Eugenio)
- Mac OS free surfer instalation (Vasile, Eduard) (Vasile, Eduard)
- Re: Mac OS free surfer instalation (Vasile, Eduard) (Dicamillo, Robert)
- mri_surf2surf --mapmethod nnf not working? (Viessmann, Olivia M.)
- create label from cluster obtained with mri_glm-fit-sim (Ting Li)
- Re: create label from cluster obtained with mri_glm-fit-sim (Ting Li)
- Re: create label from cluster obtained with mri_glm-fit-sim (Ting Li)
- Re: mri_surf2surf --mapmethod nnf not working? (Greve, Douglas N.,Ph.D.)
- Problem with new tool on thalamus segmentation (stdp82@virgilio.it)
- Re: mri_surf2surf --mapmethod nnf not working? (Viessmann, Olivia M.)
Message: 1 Date: Wed, 3 Oct 2018 17:09:32 +0000 From: "Greve, Douglas N.,Ph.D." DGREVE@mgh.harvard.edu Subject: Re: [Freesurfer] output values of vertices on surface into a textfile To: "freesurfer@nmr.mgh.harvard.edu" freesurfer@nmr.mgh.harvard.edu Message-ID: e6681419-a7f2-cf18-fd5b-3f5455ce8236@mgh.harvard.edu Content-Type: text/plain; charset="utf-8"
mris_convert lh.white lh.white.asc will convert it to ascii. This file will have both xyz coordinates and neighborhood relationships, so you'll have to delete the latter. You can also load the surface into matlab with read_surf.m
On 10/03/2018 11:48 AM, Sims, Sara A wrote:
????????External Email - Use Caution
Hello!
I would like to output the location and value of each vertex on a surface to a text file. How could I go about doing this?
Thanks,
Sara Sims
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Message: 2 Date: Wed, 3 Oct 2018 21:09:55 +0200 From: Marcel Heers marcel.heers@gmail.com Subject: [Freesurfer] hippocampal subfields error To: freesurfer@nmr.mgh.harvard.edu Message-ID: < CAMq9WnM7pRzZmGYA6PhxKa8GHPgrZraA_4sBspBOzOc9qjV5fQ@mail.gmail.com> Content-Type: text/plain; charset="utf-8"
External Email - Use CautionDear Eugenio,
I am currently testing the newest version of your hippocampal subfield analysis script. If I process the data on my macbook the files hipposubfields.lh.T2.v21.file_ID contain the volumes of the different nuclei, but on the linux server these files remain empty. On the server I installed freesurfer as local user. Do you have any suggestions how to check what might go wrong?
Thanks for your help!
Marcel