yes, just specfiy the seed you want with the anatomy you want when you run mkanalysis-sess

On 01/27/2016 05:27 PM, stdp82@virgilio.it wrote:

Briefly, is possible to map the fictional connectivity between a right seed and left cortex?

Stefano

----Messaggio originale----
Da: stdp82@virgilio.it
Data: 27-gen-2016 18.57
A: <freesurfer@nmr.mgh.harvard.edu>
Ogg: [Freesurfer] Ref FAST and results visualization issue

Hi list,

I have two requests please.

A- I need to have a reference for FS-FAST (seed based analysis on
rs data)

B- I have difficulties for results visualization.

How can I do to visualize the the cortical areas which are
functionally connected with the controlateral seed?


For example, my seed are right and left amygdala.
To visualize RIGHT amygdala - RIGHT cortex connectivity I'm doing:

cd my-group/fc.ramgseed.surf.lh/R_Amygdala


tksurfer fsaverage rh inflated -aparc -overlay
my-glm.wls/intercept/sig.nii.gz

and all is fine.

To visualize RIGHT amygdala - LEFT cortex connectivity I'm doing:

tksurfer fsaverage lh inflated -aparc -overlay
my-glm.wls/intercept/sig.nii.gz

but the image is so confused. It seem to be the translated image
which I have projected in the right semi.


Thanks


Stefano

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