[Freesurfer] R: Ref FAST and results visualization issue

Briefly, is possible to map the fictional connectivity between a right seed and left cortex? Stefano

----Messaggio originale----

Da: stdp82@virgilio.it

Data: 27-gen-2016 18.57

A: freesurfer@nmr.mgh.harvard.edu

Ogg: [Freesurfer] Ref FAST and results visualization issue

Hi list, I have two requests please. A- I need to have a reference for FS-FAST (seed based analysis on rs data) B- I have difficulties for results visualization. How can I do to visualize the the cortical areas which are functionally connected with the controlateral seed? For example, my seed are right and left amygdala.To visualize RIGHT amygdala - RIGHT cortex connectivity I'm doing: cd my-group/fc.ramgseed.surf.lh/R_Amygdala tksurfer fsaverage rh inflated -aparc -overlay my-glm.wls/intercept/sig.nii.gz

and all is fine. To visualize RIGHT amygdala - LEFT cortex connectivity I'm doing:

tksurfer fsaverage lh inflated -aparc -overlay my-glm.wls/intercept/sig.nii.gz

but the image is so confused. It seem to be the translated image which I have projected in the right semi.

Thanks

Stefano