Hello Victor,

This is a known issue with the current dev version of 7.3.2. You can find the patch here: https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/7.3.2-patch/synthsr/ Instructions are in the 'readme.txt'

Best, Jackson ________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Zeng, Victor (BIDMC - Keshavan - Psychiatry) vzeng@bidmc.harvard.edu Sent: Friday, February 17, 2023 1:22 PM To: freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] error with synthsr

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Hi developers,

Using freesurfer-linux-centos7_x86_64-dev-20230216-9bc2be6, I receive an error following mri_synthsr.

It says :

get_data() is deprecated in favor of get_fdata(), which has a more predictable return type. To obtain get_data() behavior going forward, use numpy.asanyarray(img.dataobj).

* deprecated from version: 3.0 * Raises <class 'nibabel.deprecator.ExpiredDeprecationError'> as of version: 5.0 resuming program execution

Since this seems to be a python problem, I am using python 3.7.7 and python 3.9.12, and neither seem to work.

Thanks,

Victor Zeng Beth Israel Deaconess Medical Center Keshavan Lab -- ________________________________ PLEASE NOTE: This message is intended for the use of the person to whom it is addressed. It may contain information that is privileged, confidential and exempt from disclosure under applicable law. If you are not the intended recipient, your use of this message for any purpose is strictly prohibited. If you have received this communication in error, please delete the message and notify the sender so that we may correct our records. See our web page at http://www.bilh.org for a full directory of Beth Israel Lahey Health sites, staff, services and career opportunities.