Sorry, I don't know anything about the UCSFFSL table. doug

On 11/05/2012 11:41 AM, Zhiyong Xie wrote:

Hi Doug, Thank you for your response. I did not find the single measurement for Cortical Gray matter volume and Cortical white matter from UCSFFSL table. looks like I need to add up all numbers for cortex regions and plus subcortical regions you indicated and cerebellum. Another thing that always confused me in UCSFFSL is hippocampus. In the dictionary, it was reported as "Volume (WM Parcellation) of LeftHippocampus/RightHippocampus". I did not find GM parcellation of hippocampus. I do not know why hippocampus was classified as WM parcellation. Thank you for your help. Sean

*From:* Douglas N Greve greve@nmr.mgh.harvard.edu *To:* freesurfer@nmr.mgh.harvard.edu *Sent:* Monday, November 5, 2012 10:42 AM *Subject:* Re: [Freesurfer] whole brain volume from ADNI UCSFFSL table

Cortical Gray matter volume + Cortical white matter + subcortical gray volume + cerebellum subcortical gray is:

Left_Thalamus Right_Thalamus Left_Thalamus_Proper Right_Thalamus_Proper Left_Caudate Right_Caudate Left_Putamen Right_Putamen Left_Pallidum Right_Pallidum Left_Hippocampus Right_Hippocampus Left_Amygdala Right_Amygdala Left_Accumbens_area Right_Accumbens_area Left_VentralDC Right_VentralDC

doug

On 11/02/2012 10:48 AM, Zhiyong Xie wrote:

...

I knew this question has been asked before and it was suggested to use /SupraTentorial/ as the whole brain volume. I am working with ADNI data and cannot find this measurement from UCSFFSL table. As my understanding, UCSFFSL table was generated by Freesurfer 4.4. I was wondering which structures I should add up to get whole brain volume for comparison between AD, MCI, and normal people. Thanks Sean

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